Erik Lindahl

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Berk HessKTH Royal Institute of Technology, Stockholm, Sweden; Science for Life Laboratory, Stockholm, SwedenVerified email at scilifelab.se
David van der SpoelProfessor of Biology, Uppsala UniversityVerified email at xray.bmc.uu.se
Mark AbrahamVoxo ABVerified email at kth.se
Szilárd PállResearcher, PDC KTH Royal Institute of TechnologyVerified email at kth.se
Peter KassonProfessor, Georgia Tech and University of Virginia and Wallenberg Academy Fellow, Uppsala UniversityVerified email at gatech.edu
Björn ForsbergKarolinska InstitutetVerified email at dbb.su.se
Pär BjelkmarVerified email at inera.se
Roland SchulzIntelVerified email at rschulz.eu
Carsten KutznerMax Planck Institute for Multidisciplinary SciencesVerified email at gwdg.de
Jeremy C SmithUniversity of Tennessee KnoxvilleVerified email at ornl.gov
Rebecca J HowardSenior Researcher, Stockholm UniversityVerified email at scilifelab.se
Per LarssonAssociate Professor, Uppsala UniversityVerified email at farmaci.uu.se
Dari KimaniusChan Zuckerberg Institute for Advanced Biological ImagingVerified email at czii.org
Gerrit GroenhofDepartment of Chemistry & Nanoscience Center, University of JyväskyläVerified email at jyu.fi
Rossen ApostolovResearcher, KTH Royal Institute of TechnologyVerified email at kth.se
Alan E. MarkProfessor of Biophysical Chemistry, University of QueenslandVerified email at uq.edu.au
Olle EdholmProfessor, theoretical physics, KTH Verified email at kth.se
Marc DelarueInstitut Pasteur/CNRS FranceVerified email at pasteur.fr
Magnus LundborgResearcher at KTH, SciLifeLab, SwedenVerified email at scilifelab.se
Arne ElofssonScience for Life Laboratory and department of Biochemistry and Biophysics, Stockholm UniversityVerified email at bioinfo.se

Erik Lindahl

Professor of Biophysics, Stockholm University & KTH, Science for Life Laboratory

Verified email at dbb.su.se - Homepage

Computational biophysics membrane proteins bioinformatics molecular simulation electrophysiology


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GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers MJ Abraham, T Murtola, R Schulz, S Páll, JC Smith, B Hess, E Lindahl SoftwareX 1, 19-25, 2015	20362	2015
GROMACS: fast, flexible, and free D Van Der Spoel, E Lindahl, B Hess, G Groenhof, AE Mark, ... Journal of computational chemistry 26 (16), 1701-1718, 2005	17554	2005
GROMACS 4: algorithms for highly efficient, load-balanced, and scalable molecular simulation B Hess, C Kutzner, D Van Der Spoel, E Lindahl Journal of chemical theory and computation 4 (3), 435-447, 2008	17176	2008
GROMACS 3.0: a package for molecular simulation and trajectory analysis E Lindahl, B Hess, D Van Der Spoel Molecular modeling annual 7, 306-317, 2001	8062	2001
GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit S Pronk, S Páll, R Schulz, P Larsson, P Bjelkmar, R Apostolov, MR Shirts, ... Bioinformatics 29 (7), 845-854, 2013	7743	2013
New tools for automated high-resolution cryo-EM structure determination in RELION-3 J Zivanov, T Nakane, BO Forsberg, D Kimanius, WJH Hagen, E Lindahl, ... elife 7, e42166, 2018	4369	2018
GROMACS: fast, flexible, and free DVD Spoel, E Lindahl, B Hess, G Groenhof, AE Mark, HJC Berendsen J Comput Chem 26 (16), 1701-1718, 2005	2003	2005
Tackling exascale software challenges in molecular dynamics simulations with GROMACS S Páll, MJ Abraham, C Kutzner, B Hess, E Lindahl Solving Software Challenges for Exascale: International Conference on …, 2015	1188	2015
Implementation of the CHARMM force field in GROMACS: analysis of protein stability effects from correction maps, virtual interaction sites, and water models P Bjelkmar, P Larsson, MA Cuendet, B Hess, E Lindahl Journal of chemical theory and computation 6 (2), 459-466, 2010	1164	2010
Accelerated cryo-EM structure determination with parallelisation using GPUs in RELION-2 D Kimanius, BO Forsberg, SHW Scheres, E Lindahl elife 5, e18722, 2016	1010	2016
GROMACS user manual version 3.2 D van der Spoel, E Lindahl, B Hess, AR Van Buuren, E Apol, ... Nijenborgh 4, 9747, 2004	905	2004
Mesoscopic undulations and thickness fluctuations in lipid bilayers from molecular dynamics simulations E Lindahl, O Edholm Biophysical journal 79 (1), 426-433, 2000	739	2000
Molecular dynamics simulations of phospholipid bilayers with cholesterol C Hofsäß, E Lindahl, O Edholm Biophysical journal 84 (4), 2192-2206, 2003	622	2003
the GROMACS development team MJ Abraham, D Van Der Spoel, E Lindahl, B Hess GROMACS user manual version 5 (4), 2016	609*	2016
Heterogeneous parallelization and acceleration of molecular dynamics simulations in GROMACS S Páll, A Zhmurov, P Bauer, M Abraham, M Lundborg, A Gray, B Hess, ... The Journal of Chemical Physics 153 (13), 2020	526	2020
Characterisation of molecular motions in cryo-EM single-particle data by multi-body refinement in RELION T Nakane, D Kimanius, E Lindahl, SHW Scheres elife 7, e36861, 2018	464	2018
Molecular recognition of a single sphingolipid species by a protein’s transmembrane domain FX Contreras, AM Ernst, P Haberkant, P Björkholm, E Lindahl, B Gönen, ... Nature 481 (7382), 525-529, 2012	407	2012
Membrane proteins: molecular dynamics simulations E Lindahl, MSP Sansom Current opinion in structural biology 18 (4), 425-431, 2008	378	2008
NOMAD-Ref: visualization, deformation and refinement of macromolecular structures based on all-atom normal mode analysis E Lindahl, C Azuara, P Koehl, M Delarue Nucleic acids research 34 (suppl_2), W52-W56, 2006	375	2006
GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers, SoftwareX. 1–2 (2015) 19–25 MJ Abraham, T Murtola, R Schulz, S Páll, JC Smith, B Hess, E Lindahl	372	2015

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