| Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling G Nir, I Farabella, C Pérez Estrada, CG Ebeling, BJ Beliveau, HM Sasaki, ... PLoS genetics 14 (12), e1007872, 2018 | 256 | 2018 |
| OligoMiner provides a rapid, flexible environment for the design of genome-scale oligonucleotide in situ hybridization probes BJ Beliveau, JY Kishi, G Nir, HM Sasaki, SK Saka, SC Nguyen, C Wu, ... Proceedings of the National Academy of Sciences 115 (10), E2183-E2192, 2018 | 222 | 2018 |
| 3D mapping and accelerated super-resolution imaging of the human genome using in situ sequencing HQ Nguyen, S Chattoraj, D Castillo, SC Nguyen, G Nir, A Lioutas, ... Nature methods 17 (8), 822-832, 2020 | 136 | 2020 |
| In situ super-resolution imaging of genomic DNA with OligoSTORM and OligoDNA-PAINT BJ Beliveau, AN Boettiger, G Nir, B Bintu, P Yin, X Zhuang, C Wu Super-resolution microscopy: methods and protocols, 231-252, 2017 | 85 | 2017 |
| Chromatin alternates between A and B compartments at kilobase scale for subgenic organization HL Harris, H Gu, M Olshansky, A Wang, I Farabella, Y Eliaz, A Kalluchi, ... Nature communications 14 (1), 3303, 2023 | 76 | 2023 |
| The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos J Erceg, J AlHaj Abed, A Goloborodko, BR Lajoie, G Fudenberg, ... Nature communications 10 (1), 4486, 2019 | 58 | 2019 |
| A new precision medicine initiative at the dawn of exascale computing R Nussinov, H Jang, G Nir, CJ Tsai, F Cheng Signal Transduction and Targeted Therapy 6 (1), 3, 2021 | 45 | 2021 |
| Dynamic analysis of a diffusing particle in a trapping potential M Lindner, G Nir, A Vivante, IT Young, Y Garini Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 87 (2 …, 2013 | 42 | 2013 |
| A multiplexed DNA FISH strategy for assessing genome architecture in Caenorhabditis elegans BD Fields, SC Nguyen, G Nir, S Kennedy Elife 8, e42823, 2019 | 41 | 2019 |
| Force-free measurements of the conformations of DNA molecules tethered to a wall M Lindner, G Nir, S Medalion, HRC Dietrich, Y Rabin, Y Garini Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 83 (1 …, 2011 | 34 | 2011 |
| HU protein induces incoherent DNA persistence length G Nir, M Lindner, HRC Dietrich, O Girshevitz, CE Vorgias, Y Garini Biophysical journal 100 (3), 784-790, 2011 | 33 | 2011 |
| Open structural data in precision medicine R Nussinov, H Jang, G Nir, CJ Tsai, F Cheng Annual review of biomedical data science 5 (1), 95-117, 2022 | 14 | 2022 |
| The anti-immune dengue subgenomic flaviviral RNA is present in vesicles in mosquito saliva and is associated with increased infectivity SC Yeh, T Strilets, WL Tan, D Castillo, H Medkour, F Rey-Cadilhac, ... PLoS pathogens 19 (3), e1011224, 2023 | 11 | 2023 |
| Studies of single molecules in their natural form M Lindner, G Nir, HRC Dietrich, IT Young, E Tauber, I Bronshtein, ... Israel Journal of Chemistry 49 (3‐4), 283-291, 2009 | 6 | 2009 |
| The role of near-wall drag effects in the dynamics of tethered DNA under shear flow G Nir, E Chetrit, A Vivante, Y Garini, R Berkovich Soft Matter 14 (12), 2219-2226, 2018 | 4 | 2018 |
| Genome-wide tracing to decipher nuclear organization V Flores, I Farabella, G Nir Current Opinion in Cell Biology 82, 102175, 2023 | 3 | 2023 |
| Protein-DNA Interactions Studies with Single Tethered Molecule Techniques G Nir, M Lindner, Y Garini Protein Interactions, 2012 | 2 | 2012 |
| Plasmonic Scattering as an Efficient Tool for a Force-Free Technique to Follow Single DNA Molecules M Lindner, G Nir, Y Garini The Open Optics Journal 5 (1), 2011 | 2 | 2011 |
| Abstract C015: Unraveling the structure of the Philadelphia chromosome using super-resolution microscopy GS Dewson, G Nir Cancer Epidemiology, Biomarkers & Prevention 33 (9_Supplement), C015-C015, 2024 | | 2024 |
| Defining the impact of aberrant transcription on the chromatin structure N Thomas, TE Reznicek, EL Aiden, MJ Rowley, E Wagner, G Nir Cancer Research 84 (6_Supplement), 1699-1699, 2024 | | 2024 |
Son C. NguyenUniversity of PennsylvaniaVerified email at upenn.edu