Asa Ben-Hur

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Hava SiegelmannProfessor of Computer Science, and Brain Sciences, UMass AmherstVerified email at cs.umass.edu
Anireddy S.N. ReddyProfessor of Biology, Colorado State University, Fort Collins, USAVerified email at colostate.edu
Fayyaz ul Amir Afsar MinhasUniversity of WarwickVerified email at alumni.colostate.edu
vapnikProfessor of Columbia, Fellow of NEC Labs America, Verified email at nec-labs.com
William Stafford NobleProfessor of Genome Sciences, University of WashingtonVerified email at uw.edu
Jason WestonMetaVerified email at fb.com
Mark RogersIDTVerified email at idtdna.com
Douglas BrutlagProfessor Emeritus of Biochemistry and Medicine, Stanford UniversityVerified email at stanford.edu
Shmuel FishmanTechnionVerified email at physics.technion.ac.il
Artem SokolovHead of Computational Biology, Flagship Labs 84, Inc.Verified email at fl84inc.com
Alex FoutDepartment of Statistics, Colorado State UniversityVerified email at colostate.edu
Karin VerspoorExecutive Dean, School of Computing Technologies, RMIT UniversityVerified email at rmit.edu.au
Indika KahandaUniversity of North FloridaVerified email at unf.edu
Cheng Soon OngData61, CSIRO, CanberraVerified email at anu.edu.au
Gunnar RätschProfessor, ETH ZürichVerified email at inf.ethz.ch
Soeren SonnenburgMachine Learning ResearcherVerified email at tomtom.com
Bernhard SchölkopfDirector, Max Planck Institute for Intelligent Systems & ELLIS Institute Tübingen; Professor at ETHVerified email at tuebingen.mpg.de
Olivier ChapelleGoogleVerified email at chapelle.cc
Roded SharanTel Aviv UniversityVerified email at post.tau.ac.il
Robert ShaferProfessor of Medicine, Stanford UniversityVerified email at stanford.edu

Asa Ben-Hur

Computer Science, Colorado State University

Verified email at cs.colostate.edu - Homepage

Bioinformatics Machine learning


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Support vector clustering A Ben-Hur, D Horn, HT Siegelmann, V Vapnik Journal of machine learning research 2 (Dec), 125-137, 2001	2202	2001
A user’s guide to support vector machines A Ben-Hur, J Weston Data mining techniques for the life sciences, 223-239, 2010	1328	2010
A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013	1127	2013
Protein interface prediction using graph convolutional networks AM Fout, J Byrd, B Shariat, A Ben-Hur Advances in Neural Information Processing Systems (NIPS), 2017	1078	2017
Result analysis of the nips 2003 feature selection challenge I Guyon, S Gunn, A Ben-Hur, G Dror Advances in neural information processing systems 17, 2004	874	2004
Support vector machines and kernels for computational biology A Ben-Hur, CS Ong, S Sonnenburg, B Schölkopf, G Rätsch PLoS computational biology 4 (10), e1000173, 2008	858	2008
A stability based method for discovering structure in clustered data A Ben-Hur, A Elisseeff, I Guyon Pacific Symposium on Biocomputing 2002, 6-17, 2001	854	2001
Kernel methods for predicting protein–protein interactions A Ben-Hur, WS Noble Bioinformatics 21 (suppl_1), i38-i46, 2005	815	2005
A survey of the sorghum transcriptome using single-molecule long reads SE Abdel-Ghany, M Hamilton, JL Jacobi, P Ngam, N Devitt, F Schilkey, ... Nature communications 7 (1), 11706, 2016	526	2016
An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17, 1-19, 2016	444	2016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019	429	2019
Genotypic predictors of human immunodeficiency virus type 1 drug resistance SY Rhee, J Taylor, G Wadhera, A Ben-Hur, DL Brutlag, RW Shafer Proceedings of the National Academy of Sciences 103 (46), 17355-17360, 2006	350	2006
Large-scale identification of yeast integral membrane protein interactions JP Miller, RS Lo, A Ben-Hur, C Desmarais, I Stagljar, WS Noble, S Fields Proceedings of the National Academy of Sciences 102 (34), 12123-12128, 2005	336	2005
Detecting stable clusters using principal component analysis A Ben-Hur, I Guyon Functional Genomics: Methods and Protocols, 159-182, 2003	318	2003
RAMClust: a novel feature clustering method enables spectral-matching-based annotation for metabolomics data CD Broeckling, FA Afsar, S Neumann, A Ben-Hur, JE Prenni Analytical chemistry 86 (14), 6812-6817, 2014	313	2014
Choosing negative examples for the prediction of protein-protein interactions A Ben-Hur, WS Noble BMC bioinformatics 7 (Suppl 1), S2, 2006	288	2006
Remote homology detection: a motif based approach A Ben-Hur, D Brutlag Bioinformatics 19 (suppl_1), i26-i33, 2003	247	2003
Universality in sandpile models A Ben-Hur, O Biham Physical Review E 53 (2), R1317, 1996	184	1996
A support vector clustering method A Ben-Hur, D Horn, HT Siegelmann, V Vapnik Proceedings 15th International Conference on Pattern Recognition. ICPR-2000 …, 2000	182	2000
SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data MF Rogers, J Thomas, ASN Reddy, A Ben-Hur Genome biology 13, 1-17, 2012	171	2012

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