Aimee R Taylor

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Daniel E. NeafseyHarvard TH Chan School of Public Health; Broad InstituteVerified email at broadinstitute.org
James A WatsonInfectious Diseases Data ObservatoryVerified email at tropmedres.ac
Rene NiehusHarvard T.H. Chan School of Public HealthVerified email at hsph.harvard.edu
Marc LipsitchDepartment of Epidemiology, Harvard School of Public HealthVerified email at hsph.harvard.edu
Pablo Martinez De SalazarSenior Research Collaborator, Swiss Tropical and Public Health InstituteVerified email at hsph.harvard.edu
Francois NostenProfessor of Tropical Medicine, Oxford UniversityVerified email at tropmedres.ac
Nicholas WhiteProfessor of Tropical Medicine, Mahidol and Oxford UniversitiesVerified email at tropmedres.ac
Mallika ImwongFaculty of Tropical Medicine, Mahidol UniversityVerified email at mahidol.edu
Nicholas P J DayProfessor of Tropical Medicine, University of OxfordVerified email at ndm.ox.ac.uk
Bryan GreenhouseAssociate Professor, University of California, San FranciscoVerified email at ucsf.edu
Stephen SchaffnerSenior Computational Biologist, Broad InstituteVerified email at broadinstitute.org
Grant DorseyProfessor of Medicine, University of California San FranciscoVerified email at ucsf.edu
Philip RosenthalProfessor of Pediatrics & Surgery, University of CA an FranciscoVerified email at peds.ucsf.edu
Bronwyn MacInnisBroad InstituteVerified email at broadinstitute.org
Chris HolmesVerified email at stats.ox.ac.uk
Pierre E. JacobESSEC Business SchoolVerified email at essec.edu
Melissa ConradPostdoctoral Scholar, University of California San FranciscoVerified email at ucsf.edu
Diego Fernando Echeverri GarciaMicrobiology Department, Universidad del Valle, Cali, ColombiaVerified email at correounivalle.edu.co
Moses R KamyaMakerere University College of Health Sciences, Infectious Diseases ResearchVerified email at idrc-uganda.org
Philippe J GuerinUniversity of Oxford - Nuffield Department of Medicine - Centre for Tropical Medicine and GlobalVerified email at iddo.org

Aimee R Taylor

Institut Pasteur

Verified email at pasteur.fr

malaria statistical genetics visualisation


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Using observational data to quantify bias of traveller-derived COVID-19 prevalence estimates in Wuhan, China R Niehus, PM De Salazar, AR Taylor, M Lipsitch The Lancet Infectious Diseases, 2020	200*	2020
Identifying locations with possible undetected imported severe acute respiratory syndrome coronavirus 2 cases by using importation predictions PM De Salazar, R Niehus, A Taylor, COF Buckee, M Lipsitch Emerging infectious diseases 26 (7), 1465, 2020	150*	2020
hmmIBD: software to infer pairwise identity by descent between haploid genotypes SF Schaffner, AR Taylor, W Wong, DF Wirth, DE Neafsey Malaria journal 17, 1-4, 2018	137	2018
Advances and opportunities in malaria population genomics DE Neafsey, AR Taylor, BL MacInnis Nature Reviews Genetics 22 (8), 502-517, 2021	116	2021
Quantifying connectivity between local Plasmodium falciparum malaria parasite populations using identity by descent AR Taylor, SF Schaffner, GC Cerqueira, SC Nkhoma, TJC Anderson, ... PLoS genetics 13 (10), e1007065, 2017	112	2017
Resolving the cause of recurrent Plasmodium vivax malaria probabilistically AR Taylor, JA Watson, CS Chu, K Puaprasert, J Duanguppama, NPJ Day, ... Nature communications 10 (1), 5595, 2019	103	2019
Mapping malaria by combining parasite genomic and epidemiologic data A Wesolowski, AR Taylor, HH Chang, R Verity, S Tessema, JA Bailey, ... BMC medicine 16 (1), 1-8, 2018	98	2018
Estimating relatedness between malaria parasites AR Taylor, PE Jacob, DE Neafsey, CO Buckee Genetics 212 (4), 1337-1351, 2019	74	2019
Changing antimalarial drug resistance patterns identified by surveillance at three sites in Uganda P Tumwebaze, S Tukwasibwe, A Taylor, M Conrad, E Ruhamyankaka, ... The Journal of infectious diseases 215 (4), 631-635, 2016	61	2016
Design and implementation of multiplexed amplicon sequencing panels to serve genomic epidemiology of infectious disease: a malaria case study E LaVerriere, P Schwabl, M Carrasquilla, AR Taylor, ZM Johnson, ... Molecular ecology resources 22 (6), 2285-2303, 2022	44	2022
Evaluating the reliability of mobility metrics from aggregated mobile phone data as proxies for SARS-CoV-2 transmission in the USA: a population-based study N Kishore, AR Taylor, PE Jacob, N Vembar, T Cohen, CO Buckee, ... The Lancet Digital Health 4 (1), e27-e36, 2022	41	2022
Artemether-Lumefantrine and Dihydroartemisinin-Piperaquine Exert Inverse Selective Pressure on Plasmodium Falciparum Drug Sensitivity-Associated … AR Taylor, JA Flegg, CC Holmes, PJ Guérin, CH Sibley, MD Conrad, ... Open Forum Infectious Diseases 4 (1), ofw229, 2017	41	2017
Estimation of malaria haplotype and genotype frequencies: a statistical approach to overcome the challenge associated with multiclonal infections AR Taylor, JA Flegg, SL Nsobya, A Yeka, MR Kamya, PJ Rosenthal, ... Malaria Journal 13, 1-11, 2014	32	2014
Identity-by-descent with uncertainty characterises connectivity of Plasmodium falciparum populations on the Colombian-Pacific coast AR Taylor, DF Echeverry, TJC Anderson, DE Neafsey, CO Buckee PLoS genetics 16 (11), e1009101, 2020	31	2020
A molecular barcode to inform the geographical origin and transmission dynamics of Plasmodium vivax malaria E Diez Benavente, M Campos, J Phelan, D Nolder, JG Dombrowski, ... PLoS genetics 16 (2), e1008576, 2020	30	2020
Measurably recombining malaria parasites F Camponovo, CO Buckee, AR Taylor Trends in parasitology 39 (1), 17-25, 2023	25	2023
Resolving drug selection and migration in an inbred South American Plasmodium falciparum population with identity-by-descent analysis M Carrasquilla, AM Early, AR Taylor, A Knudson Ospina, DF Echeverry, ... PLoS pathogens 18 (12), e1010993, 2022	22	2022
A decision-theoretic approach to the evaluation of machine learning algorithms in computational drug discovery OP Watson, I Cortes-Ciriano, AR Taylor, JA Watson Bioinformatics, 2019	19	2019
Lineage-informative microhaplotypes for recurrence classification and spatio-temporal surveillance of Plasmodium vivax malaria parasites SV Siegel, H Trimarsanto, R Amato, K Murie, AR Taylor, E Sutanto, ... Nature Communications 15 (1), 6757, 2024	9*	2024
Tafenoquine versus Primaquine to Prevent Relapse of Plasmodium vivax Malaria. JC Quinn, S McCarthy The New England journal of medicine 380 (19), 1875-1875, 2019	6	2019

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