| Transcription-dependent dynamic supercoiling is a short-range genomic force F Kouzine, A Gupta, L Baranello, D Wojtowicz, K Ben-Aissa, J Liu, ... Nature structural & molecular biology 20 (3), 396-403, 2013 | 343 | 2013 |
| RNA polymerase II regulates topoisomerase 1 activity to favor efficient transcription L Baranello, D Wojtowicz, K Cui, BN Devaiah, HJ Chung, KY Chan-Salis, ... Cell 165 (2), 357-371, 2016 | 297 | 2016 |
| Permanganate/S1 nuclease footprinting reveals non-B DNA structures with regulatory potential across a mammalian genome F Kouzine, D Wojtowicz, L Baranello, A Yamane, S Nelson, W Resch, ... Cell systems 4 (3), 344-356. e7, 2017 | 215 | 2017 |
| Global regulation of promoter melting in naive lymphocytes F Kouzine, D Wojtowicz, A Yamane, W Resch, KR Kieffer-Kwon, R Bandle, ... Cell 153 (5), 988-999, 2013 | 168 | 2013 |
| Structural and functional characterization of the LPS transporter LptDE from Gram-negative pathogens I Botos, N Majdalani, SJ Mayclin, JG McCarthy, K Lundquist, D Wojtowicz, ... Structure 24 (6), 965-976, 2016 | 154 | 2016 |
| Crystal Structures of the Outer Membrane Domain of Intimin and Invasin from Enterohemorrhagic E. coli and Enteropathogenic Y. pseudotuberculosis JW Fairman, N Dautin, D Wojtowicz, W Liu, N Noinaj, TJ Barnard, E Udho, ... Structure, 2012 | 107 | 2012 |
| Detecting presence of mutational signatures in cancer with confidence X Huang, D Wojtowicz, TM Przytycka Bioinformatics 34 (2), 330-337, 2018 | 102 | 2018 |
| DNA break mapping reveals topoisomerase II activity genome-wide L Baranello, F Kouzine, D Wojtowicz, K Cui, TM Przytycka, K Zhao, ... International journal of molecular sciences 15 (7), 13111-13122, 2014 | 92 | 2014 |
| The genome-wide distribution of non-B DNA motifs is shaped by operon structure and suggests the transcriptional importance of non-B DNA structures in Escherichia coli X Du, D Wojtowicz, AA Bowers, D Levens, CJ Benham, TM Przytycka Nucleic acids research 41 (12), 5965-5977, 2013 | 65 | 2013 |
| BeWith: A Between-Within method to discover relationships between cancer modules via integrated analysis of mutual exclusivity, co-occurrence and functional interactions P Dao, YA Kim, D Wojtowicz, S Madan, R Sharan, TM Przytycka PLoS computational biology 13 (10), e1005695, 2017 | 51 | 2017 |
| Potential non-B DNA regions in the human genome are associated with higher rates of nucleotide mutation and expression variation X Du, EM Gertz, D Wojtowicz, D Zhabinskaya, D Levens, CJ Benham, ... Nucleic acids research 42 (20), 12367-12379, 2014 | 51 | 2014 |
| Teasing apart translational and transcriptional components of stochastic variations in eukaryotic gene expression R Salari, D Wojtowicz, J Zheng, D Levens, Y Pilpel, TM Przytycka Public Library of Science 8 (8), e1002644, 2012 | 29 | 2012 |
| Mutational signatures: From methods to mechanisms YA Kim, MDM Leiserson, P Moorjani, R Sharan, D Wojtowicz, ... Annual Review of Biomedical Data Science 4 (1), 189-206, 2021 | 26 | 2021 |
| Network-based approaches elucidate differences within APOBEC and clock-like signatures in breast cancer YA Kim, D Wojtowicz, R Sarto Basso, I Sason, W Robinson, ... Genome medicine 12, 1-12, 2020 | 24 | 2020 |
| Hidden Markov models lead to higher resolution maps of mutation signature activity in cancer D Wojtowicz, I Sason, X Huang, YA Kim, MDM Leiserson, TM Przytycka, ... Genome medicine 11, 1-12, 2019 | 23 | 2019 |
| In vivo chemical probing for G-quadruplex formation F Kouzine, D Wojtowicz, A Yamane, R Casellas, TM Przytycka, DL Levens G-Quadruplex Nucleic Acids: Methods and Protocols, 369-382, 2019 | 14 | 2019 |
| A model for the evolution of paralog families in genomes R Rudnicki, J Tiuryn, D Wójtowicz Journal of mathematical biology 53, 759-770, 2006 | 13 | 2006 |
| Dosage-Dependent Expression Variation Suppressed on the Drosophila Male X Chromosome H Lee, DY Cho, D Wojtowicz, ST Harbison, S Russell, B Oliver, ... G3: Genes, Genomes, Genetics 8 (2), 587-598, 2018 | 12 | 2018 |
| A discrete model of evolution of small paralog families J Tiuryn, D Wojtowicz, R Rudnicki Mathematical Models and Methods in Applied Sciences 17 (06), 933-955, 2007 | 12 | 2007 |
| Evolution of gene families based on gene duplication, loss, accumulated change, and innovation D Wójtowicz, J Tiuryn Journal of Computational Biology 14 (4), 479-495, 2007 | 11 | 2007 |
Teresa PrzytyckaNCBI / NLM / NIHVerified email at ncbi.nlm.nih.gov
