| Structure-based control of complex networks with nonlinear dynamics JGT Zañudo, G Yang, R Albert Proceedings of the National Academy of Sciences 114 (28), 7234-7239, 2017 | 262 | 2017 |
| Network modeling of TGFβ signaling in hepatocellular carcinoma epithelial-to-mesenchymal transition reveals joint sonic hedgehog and Wnt pathway activation SN Steinway, JGT Zañudo, W Ding, CB Rountree, DJ Feith, ... Cancer research 74 (21), 5963-5977, 2014 | 250 | 2014 |
| The Angiosarcoma Project: enabling genomic and clinical discoveries in a rare cancer through patient-partnered research CA Painter, E Jain, BN Tomson, M Dunphy, RE Stoddard, BS Thomas, ... Nature medicine 26 (2), 181-187, 2020 | 225 | 2020 |
| Cell fate reprogramming by control of intracellular network dynamics JGT Zañudo, R Albert PLOS Computational Biology 11 (4), e1004193, 2015 | 223 | 2015 |
| An effective network reduction approach to find the dynamical repertoire of discrete dynamic networks JGT Zañudo, R Albert Chaos: An Interdisciplinary Journal of Nonlinear Science 23 (2), 2013 | 150 | 2013 |
| Combinatorial interventions inhibit TGFβ-driven epithelial-to-mesenchymal transition and support hybrid cellular phenotypes SN Steinway, JGT Zañudo, PJ Michel, DJ Feith, TP Loughran, R Albert NPJ systems biology and applications 1 (1), 1-12, 2015 | 135 | 2015 |
| Adjuvant paclitaxel and trastuzumab for node-negative, HER2-positive breast cancer: final 10-year analysis of the open-label, single-arm, phase 2 APT trial SM Tolaney, P Tarantino, N Graham, N Tayob, L Parè, G Villacampa, ... The Lancet Oncology 24 (3), 273-285, 2023 | 103 | 2023 |
| A new discrete dynamic model of ABA-induced stomatal closure predicts key feedback loops R Albert, BR Acharya, BW Jeon, JGT Zañudo, M Zhu, K Osman, ... PLoS biology 15 (9), e2003451, 2017 | 64 | 2017 |
| Discrete dynamic network modeling of oncogenic signaling: Mechanistic insights for personalized treatment of cancer JGT Zañudo, SN Steinway, R Albert Current Opinion in Systems Biology 9, 1-10, 2018 | 61 | 2018 |
| A network modeling approach to elucidate drug resistance mechanisms and predict combinatorial drug treatments in breast cancer J Gómez Tejeda Zañudo, M Scaltriti, R Albert Cancer convergence 1, 1-25, 2017 | 60 | 2017 |
| Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks JC Rozum, J Gómez Tejeda Zañudo, X Gan, D Deritei, R Albert Science Advances 7 (29), eabf8124, 2021 | 54 | 2021 |
| Target control in logical models using the domain of influence of nodes G Yang, J Gómez Tejeda Zañudo, R Albert Frontiers in physiology 9, 454, 2018 | 53 | 2018 |
| Towards control of cellular decision-making networks in the epithelial-to-mesenchymal transition JGT Zañudo, MT Guinn, K Farquhar, M Szenk, SN Steinway, G Balázsi, ... Physical biology 16 (3), 031002, 2019 | 51 | 2019 |
| Boolean threshold networks: Virtues and limitations for biological modeling JGT Zanudo, M Aldana, G Martínez-Mekler Information Processing and Biological Systems, 113-151, 2011 | 49 | 2011 |
| pystablemotifs: Python library for attractor identification and control in Boolean networks JC Rozum, D Deritei, KH Park, J Gómez Tejeda Zañudo, R Albert Bioinformatics 38 (5), 1465-1466, 2022 | 39 | 2022 |
| ER+ breast cancer strongly depends on MCL-1 and BCL-xL anti-apoptotic proteins C Alcon, JGT Zañudo, R Albert, N Wagle, M Scaltriti, A Letai, J Samitier, ... Cells 10 (7), 1659, 2021 | 23 | 2021 |
| Mathematical modeling of the Candida albicans yeast to hyphal transition reveals novel control strategies DJ Wooten, JGT Zañudo, D Murrugarra, AM Perry, A Dongari-Bagtzoglou, ... PLoS computational biology 17 (3), e1008690, 2021 | 21 | 2021 |
| Cell Line–Specific Network Models of ER+ Breast Cancer Identify Potential PI3Kα Inhibitor Resistance Mechanisms and Drug Combinations J Gómez Tejeda Zañudo, P Mao, C Alcon, K Kowalski, GN Johnson, G Xu, ... Cancer research 81 (17), 4603-4617, 2021 | 17 | 2021 |
| Structure-based approach to identifying small sets of driver nodes in biological networks E Newby, JG Tejeda Zañudo, R Albert Chaos: An Interdisciplinary Journal of Nonlinear Science 32 (6), 2022 | 14 | 2022 |
| Exemestane plus everolimus and palbociclib in metastatic breast cancer: clinical response and genomic/transcriptomic determinants of resistance in a phase I/II trial J Gómez Tejeda Zañudo, R Barroso-Sousa, E Jain, Q Jin, T Li, ... Nature Communications 15 (1), 2446, 2024 | 8* | 2024 |
Reka AlbertEvan Pugh University Professor, Penn StateVerified email at psu.edu