| Transcriptome-scale super-resolved imaging in tissues by RNA seqFISH+ CHL Eng, M Lawson, Q Zhu, R Dries, N Koulena, Y Takei, J Yun, ... Nature 568 (7751), 235-239, 2019 | 1578 | 2019 |
| Giotto, a toolbox for integrative analysis and visualization of spatial expression data R Dries*, Q Zhu*, R Dong, CHL Eng, H Li, K Liu, Y Fu, T Zhao, A Sarkar, ... Genome biology, 2021 | 703 | 2021 |
| The human body at cellular resolution: the NIH Human Biomolecular Atlas Program Caltech-UW TMC Cai Long lcai@ caltech. edu 21 b Shendure Jay 9 Trapnell Cole ... Nature 574 (7777), 187-192, 2019 | 464 | 2019 |
| Direct promoter repression by BCL11A controls the fetal to adult hemoglobin switch N Liu*, VV Hargreaves*, Q Zhu*, JV Kurland, J Hong, W Kim, F Sher, ... Cell 173 (2), 430-442. e17, 2018 | 454 | 2018 |
| Defining cell-type specificity at the transcriptional level in human disease W Ju, CS Greene, F Eichinger, V Nair, JB Hodgin, M Bitzer, Y Lee, Q Zhu, ... Genome research 23 (11), 1862-1873, 2013 | 256 | 2013 |
| Identification of spatially associated subpopulations by combining scRNAseq and sequential fluorescence in situ hybridization data Q Zhu, S Shah, R Dries, L Cai, GC Yuan Nature biotechnology 36 (12), 1183-1190, 2018 | 254 | 2018 |
| Revealing the critical regulators of cell identity in the mouse cell atlas S Suo, Q Zhu, A Saadatpour, L Fei, G Guo, GC Yuan Cell reports 25 (6), 1436-1445. e3, 2018 | 245 | 2018 |
| Accurate estimation of cell-type composition from gene expression data D Tsoucas, R Dong, H Chen, Q Zhu, G Guo, GC Yuan Nature communications 10 (1), 2975, 2019 | 197 | 2019 |
| IFNγ-Dependent Tissue-Immune Homeostasis Is Co-opted in the Tumor Microenvironment C Nirschl, M Suraez-Farinas, B Izar, S Prakadan, R Dannenfelser, I Tirosh, ... Cell 170 (1), 127-141, 2017 | 161 | 2017 |
| Targeted exploration and analysis of large cross-platform human transcriptomic compendia Q Zhu, AK Wong, A Krishnan, MR Aure, A Tadych, R Zhang, DC Corney, ... Nature methods 12 (3), 211-214, 2015 | 153 | 2015 |
| CUT&RUNTools: a flexible pipeline for CUT&RUN processing and footprint analysis Q Zhu, N Liu, SH Orkin, GC Yuan Genome Biology 20, 192, 2019 | 135 | 2019 |
| The collapse of gene complement following whole genome duplication D Sankoff, C Zheng, Q Zhu BMC genomics 11, 1-11, 2010 | 129 | 2010 |
| Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors MR Aure, SK Leivonen, T Fleischer, Q Zhu, J Overgaard, J Alsner, ... Genome biology 14, 1-20, 2013 | 114 | 2013 |
| Transcription factor competition at the γ-globin promoters controls hemoglobin switching N Liu, S Xu, Q Yao, Q Zhu, Y Kai, JY Hsu, P Sakon, L Pinello, GC Yuan, ... Nature genetics 53 (4), 511-520, 2021 | 92 | 2021 |
| Scaffold filling, contig fusion and comparative gene order inference A Muñoz, C Zheng, Q Zhu, VA Albert, S Rounsley, D Sankoff BMC bioinformatics 11, 1-15, 2010 | 66 | 2010 |
| Algorithms for the extraction of synteny blocks from comparative maps V Choi, C Zheng, Q Zhu, D Sankoff Algorithms in Bioinformatics: 7th International Workshop, WABI 2007 …, 2007 | 55 | 2007 |
| Guided genome halving: hardness, heuristics and the history of the Hemiascomycetes C Zheng, Q Zhu, Z Adam, D Sankoff Bioinformatics 24 (13), i96-i104, 2008 | 51 | 2008 |
| Removing noise and ambiguities from comparative maps in rearrangement analysis C Zheng, Q Zhu, D Sankoff IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 515-522, 2007 | 51 | 2007 |
| Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms CY Park, A Krishnan, Q Zhu, AK Wong, YS Lee, OG Troyanskaya Bioinformatics 31 (7), 1093-1101, 2015 | 50 | 2015 |
| WebGestalt 2024: faster gene set analysis and new support for metabolomics and multi-omics JM Elizarraras, Y Liao, Z Shi, Q Zhu, AR Pico, B Zhang Nucleic Acids Research, gkae456, 2024 | 43 | 2024 |
Guo-Cheng YuanProfessor of Computational Biology, Icahn School of Medicine at Mount SinaiVerified email at mssm.edu