| Sampling alternative conformational states of transporters and receptors with AlphaFold2 D Del Alamo, D Sala, HS Mchaourab, J Meiler Elife 11, e75751, 2022 | 338 | 2022 |
| Modeling conformational states of proteins with AlphaFold D Sala, F Engelberger, HS Mchaourab, J Meiler Current Opinion in Structural Biology 81, 102645, 2023 | 115 | 2023 |
| Biasing AlphaFold2 to predict GPCRs and Kinases with user-defined functional or structural properties D Sala, P Hildebrand, J Meiler Frontiers in Molecular Biosciences 10, 1121962, 2023 | 47 | 2023 |
| Investigation of the iron (II) release mechanism of human H-ferritin as a function of pH D Sala, S Ciambellotti, A Giachetti, P Turano, A Rosato Journal of Chemical Information and Modeling 57 (9), 2112-2118, 2017 | 29 | 2017 |
| Teeth segmentation in panoramic dental X-ray using mask regional convolutional neural network G Rubiu, M Bologna, M Cellina, M Cè, D Sala, R Pagani, E Mattavelli, ... Applied Sciences 13 (13), 7947, 2023 | 27 | 2023 |
| Protein structure prediction assisted with sparse NMR data in CASP13 D Sala, YJ Huang, CA Cole, DA Snyder, G Liu, Y Ishida, GVT Swapna, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1315-1332, 2019 | 23 | 2019 |
| Modeling of protein conformational changes with Rosetta guided by limited experimental data D Sala, D Del Alamo, HS Mchaourab, J Meiler Structure 30 (8), 1157-1168. e3, 2022 | 22 | 2022 |
| Speeding up the identification of cystic fibrosis transmembrane conductance regulator-targeted drugs: an approach based on bioinformatics strategies and surface plasmon resonance M Rusnati, D Sala, A Orro, A Bugatti, G Trombetti, E Cichero, C Urbinati, ... Molecules 23 (1), 120, 2018 | 17 | 2018 |
| Targeting in silico GPCR conformations with ultra-large library screening for hit discovery D Sala, H Batebi, K Ledwitch, PW Hildebrand, J Meiler Trends in pharmacological sciences 44 (3), 150-161, 2023 | 15 | 2023 |
| Insights into the dynamics of the human zinc transporter ZnT8 by MD simulations D Sala, A Giachetti, A Rosato Journal of Chemical Information and Modeling 61 (2), 901-912, 2021 | 14 | 2021 |
| An atomistic view of the YiiP structural changes upon zinc (II) binding D Sala, A Giachetti, A Rosato Biochimica et Biophysica Acta (BBA)-General Subjects 1863 (10), 1560-1567, 2019 | 13 | 2019 |
| Application of molecular dynamics to the investigation of metalloproteins involved in metal homeostasis D Sala, F Musiani, A Rosato European journal of inorganic chemistry 2018 (43), 4661-4677, 2018 | 13 | 2018 |
| Learning to identify physiological and adventitious metal-binding sites in the three-dimensional structures of proteins by following the hints of a deep neural network V Laveglia, A Giachetti, D Sala, C Andreini, A Rosato Journal of Chemical Information and Modeling 62 (12), 2951-2960, 2022 | 11 | 2022 |
| A protocol for the refinement of NMR structures using simultaneously pseudocontact shift restraints from multiple lanthanide ions D Sala, A Giachetti, C Luchinat, A Rosato Journal of biomolecular NMR 66 (3), 175-185, 2016 | 10 | 2016 |
| Molecular dynamics simulations of metalloproteins: A folding study of rubredoxin from Pyrococcus furiosus D Sala, A Giachetti, A Rosato AIMS BIOPHYSICS 5, 77-96, 2018 | 7 | 2018 |
| A protocol to automatically calculate homo-oligomeric protein structures through the integration of evolutionary constraints and NMR ambiguous contacts D Sala, L Cerofolini, M Fragai, A Giachetti, C Luchinat, A Rosato Computational and Structural Biotechnology Journal 18, 114-124, 2020 | 4 | 2020 |
| Dynamical Behavior and Conformational Selection Mechanism of the Intrinsically Disordered Sic1 Kinase-Inhibitor Domain D Sala, U Cosentino, A Ranaudo, C Greco, G Moro Life 10 (7), 110, 2020 | 3 | 2020 |
| Diagnostic performance of an AI algorithm for the detection of appendicular bone fractures in pediatric patients PN Franco, C Maino, I Mariani, DG Gandola, D Sala, M Bologna, ... European Journal of Radiology 178, 111637, 2024 | 2 | 2024 |
| Non-canonical amino acids for site-directed spin labeling of membrane proteins K Ledwitch, G Künze, E Okwei, D Sala, J Meiler Current Opinion in Structural Biology 89, 102936, 2024 | | 2024 |
| Application of molecular dynamics to the understanding of metal-binding macromolecules and their adducts D Sala | | 2019 |
Jens MeilerVanderbilt University & University LeipzigVerified email at meilerlab.org