| FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data SS Tithi, FO Aylward, RV Jensen, L Zhang PeerJ 6, e4227, 2018 | 80 | 2018 |
| Parallel evolution of genome streamlining and cellular bioenergetics across the marine radiation of a bacterial phylum EW Getz, SS Tithi, L Zhang, FO Aylward MBio 9 (5), 10.1128/mbio. 01089-18, 2018 | 27 | 2018 |
| Discovery of novel predisposing coding and noncoding variants in familial Hodgkin lymphoma JE Flerlage, JR Myers, JL Maciaszek, N Oak, SR Rashkin, Y Hui, ... Blood 141 (11), 1293-1307, 2023 | 20 | 2023 |
| A rare variant analysis framework using public genotype summary counts to prioritize disease-predisposition genes W Chen, S Wang, SS Tithi, DW Ellison, DJ Schaid, G Wu Nature communications 13 (1), 2592, 2022 | 13 | 2022 |
| Cancer germline predisposing variants and late mortality from subsequent malignant neoplasms among long-term childhood cancer survivors: a report from the St Jude Lifetime … C Chen, N Qin, M Wang, Q Dong, SS Tithi, Y Hui, W Chen, G Wu, ... The Lancet Oncology 24 (10), 1147-1156, 2023 | 12 | 2023 |
| FastViromeExplorer: a pipeline for virus and phage identification and abundance profiling in metagenomics data. PeerJ 6: e4227 SS Tithi, FO Aylward, RV Jensen, L Zhang | 11 | 2018 |
| Parallel evolution of genome streamlining and cellular bioenergetics across the marine radiation of a bacterial phylum. mBio 9: e01089-18 EW Getz, SS Tithi, L Zhang, FO Aylward Web of Science, 2018 | 6 | 2018 |
| A Bayesian Assignment Method for Ambiguous Bisulfite Short Reads H Tran, X Wu, SS Tithi, M Sun, H Xie, L Zhang PLOS ONE, 2016 | 6 | 2016 |
| SNPwise: A SNP Aware Short Read Aligner SS Tithi, LS Heath, L Zhang 7th International Conference on Bioinformatics and Computational Biology …, 2015 | 4 | 2015 |
| Biopipe: A Lightweight System Enabling Comparison of Bioinformatics Tools and Workflows SS Tithi, J Lee, L Zhang, S Li, N Meng bioRxiv, 201186, 2017 | 3 | 2017 |
| FastViromeExplorer-novel: recovering draft genomes of novel viruses and phages in metagenomic data SS Tithi, FO Aylward, RV Jensen, L Zhang Journal of Computational Biology 30 (4), 391-408, 2023 | 2 | 2023 |
| Modeling Ebola Outbreak: A Case Study on 2014 Outbreak in Sierra Leone SS Tithi, MS Hasan 6th ACM Conference on Bioinformatics, Computational Biology, and Health …, 2015 | 2 | 2015 |
| Virseqimprover: an integrated pipeline for viral contig error correction, extension, and annotation H Song, SS Tithi, C Brown, FO Aylward, R Jensen, L Zhang PeerJ 13, e18515, 2025 | 1 | 2025 |
| CoCoRV: a rare variant analysis framework using publicly available genotype summary counts to prioritize germline disease-predisposition genes W Chen, S Wang, SS Tithi, D Ellison, G Wu bioRxiv, 2021.09. 29.462472, 2021 | 1 | 2021 |
| FVE-novel: Recovering Draft Genomes of Novel Viruses and Phages in Metagenomic Data SS Tithi, FO Aylward, RV Jensen, L Zhang | | 2020 |
| Computational Analysis of Viruses in Metagenomic Data SS Tithi Virginia Tech, 2019 | | 2019 |
| Parallel Evolution of Key Genomic Features and Cellular Bioenergetics Across the Marine Radiation of a Bacterial Phylum EW Getz, SS Tithi, L Zhang, FO Aylward bioRxiv, 307454, 2018 | | 2018 |
| Diagnosing and Treating Code-Duplication Problems in Bioinformatics Libraries MS Hasan, SS Tithi, E Tilevich, L Zhang 6th IEEE International Conference on Computational Advances in Bio and …, 2016 | | 2016 |
| Incorporating Known SNPs in Short Read Mappers SS Tithi, LS Heath, L Zhang 11th International Symposium on Bioinformatics Research and Applications, 98-100, 2015 | | 2015 |
Liqing ZhangProfessor @ Computer Science, Virginia TechVerified email at vt.edu