| The human mitochondrial transcriptome TR Mercer, S Neph, ME Dinger, J Crawford, MA Smith, AMJ Shearwood, ... Cell 146 (4), 645-658, 2011 | 920 | 2011 |
| RNA duplex map in living cells reveals higher-order transcriptome structure Z Lu, QC Zhang, B Lee, RA Flynn, MA Smith, JT Robinson, C Davidovich, ... Cell 165 (5), 1267-1279, 2016 | 637 | 2016 |
| The RNA modification landscape in human disease N Jonkhout, J Tran, MA Smith, N Schonrock, JS Mattick, EM Novoa Rna 23 (12), 1754-1769, 2017 | 570 | 2017 |
| The melanoma‐upregulated long noncoding RNA SPRY4-IT1 modulates apoptosis and invasion D Khaitan, ME Dinger, J Mazar, J Crawford, MA Smith, JS Mattick, ... Cancer research 71 (11), 3852-3862, 2011 | 556 | 2011 |
| Accurate detection of m6A RNA modifications in native RNA sequences H Liu, O Begik, MC Lucas, JM Ramirez, CE Mason, D Wiener, S Schwartz, ... Nature communications 10 (1), 4079, 2019 | 459 | 2019 |
| SNORD-host RNA Zfas1 is a regulator of mammary development and a potential marker for breast cancer ME Askarian-Amiri, J Crawford, JD French, CE Smart, MA Smith, MB Clark, ... Rna 17 (5), 878-891, 2011 | 387 | 2011 |
| High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes M Singh, G Al-Eryani, S Carswell, JM Ferguson, J Blackburn, K Barton, ... Nature communications 10 (1), 1-13, 2019 | 299 | 2019 |
| Widespread purifying selection on RNA structure in mammals MA Smith, T Gesell, PF Stadler, JS Mattick Nucleic Acids Research, 10.1093/nar/gkt596, 2013 | 199 | 2013 |
| Genome-wide gene expression profiling analysis of Leishmania major and Leishmania infantum developmental stages reveals substantial differences between … A Rochette, F Raymond, JM Ubeda, M Smith, N Messier, S Boisvert, ... BMC genomics 9, 1-26, 2008 | 183 | 2008 |
| Members of a Large Retroposon Family Are Determinants of Post-Transcriptional Gene Expression in Leishmania F Bringaud, M Müller, GC Cerqueira, M Smith, A Rochette, NMA El-Sayed, ... PLoS pathogens 3 (9), e136, 2007 | 146 | 2007 |
| Intronic ATTTC repeat expansions in STARD7 in familial adult myoclonic epilepsy linked to chromosome 2 MA Corbett, T Kroes, L Veneziano, MF Bennett, R Florian, AL Schneider, ... Nature Communications 10 (1), 4920, 2019 | 137 | 2019 |
| Unexpected host dependency of Antarctic Nanohaloarchaeota JN Hamm, S Erdmann, EA Eloe-Fadrosh, A Angeloni, L Zhong, ... Proceedings of the National Academy of Sciences 116 (29), 14661-14670, 2019 | 137 | 2019 |
| Synthetic microbe communities provide internal reference standards for metagenome sequencing and analysis SA Hardwick, WY Chen, T Wong, BS Kanakamedala, IW Deveson, ... Nature communications 9 (1), 3096, 2018 | 106 | 2018 |
| GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis H Gamaarachchi, CW Lam, G Jayatilaka, H Samarakoon, JT Simpson, ... BMC bioinformatics 21, 1-13, 2020 | 105 | 2020 |
| The dark matter rises: the expanding world of regulatory RNAs MA Lindsay, S Griffiths-Jones, MB Clark, A Choudhary, MA Smith, RJ Taft, ... Essays in biochemistry 54, 1-16, 2013 | 105* | 2013 |
| Fast nanopore sequencing data analysis with SLOW5 H Gamaarachchi, H Samarakoon, SP Jenner, JM Ferguson, TG Amos, ... Nature biotechnology 40 (7), 1026-1029, 2022 | 87 | 2022 |
| Molecular barcoding of native RNAs using nanopore sequencing and deep learning MA Smith, T Ersavas, JM Ferguson, H Liu, MC Lucas, O Begik, L Bojarski, ... Genome Research, 2020 | 82* | 2020 |
| Organization and evolution of two SIDER retroposon subfamilies and their impact on the Leishmania genome MA Smith, F Bringaud, B Papadopoulou BMC genomics 10 (1), 240, 2009 | 68 | 2009 |
| Pregnancy-Induced Noncoding RNA (PINC) Associates with Polycomb Repressive Complex 2 and Regulates Mammary Epithelial Differentiation AN Shore, EB Kabotyanski, K Roarty, MA Smith, Y Zhang, CJ Creighton, ... PLoS genetics 8 (7), e1002840, 2012 | 62 | 2012 |
| DNA methylation is required to maintain both DNA replication timing precision and 3D genome organization integrity Q Du, GC Smith, PL Luu, JM Ferguson, NJ Armstrong, CE Caldon, ... Cell Reports 36 (12), 2021 | 55 | 2021 |
John MattickUNSW SydneyVerified email at unsw.edu.au