De novo design and structural characterization of proteins and metalloproteins WF DeGrado, CM Summa, V Pavone, F Nastri, A Lombardi Annual review of biochemistry 68 (1), 779-819, 1999 | 739 | 1999 |
Retrostructural analysis of metalloproteins: application to the design of a minimal model for diiron proteins A Lombardi, CM Summa, S Geremia, L Randaccio, V Pavone, ... Proceedings of the National Academy of Sciences 97 (12), 6298-6305, 2000 | 288 | 2000 |
Near-native structure refinement using in vacuo energy minimization CM Summa, M Levitt Proceedings of the National Academy of Sciences 104 (9), 3177-3182, 2007 | 182 | 2007 |
Lead optimization mapper: automating free energy calculations for lead optimization S Liu, Y Wu, T Lin, R Abel, JP Redmann, CM Summa, VR Jaber, NM Lim, ... Journal of computer-aided molecular design 27, 755-770, 2013 | 149 | 2013 |
Computational de novo design, and characterization of an A2B2 diiron protein CM Summa, MM Rosenblatt, JK Hong, JD Lear, WF DeGrado Journal of molecular biology 321 (5), 923-938, 2002 | 149 | 2002 |
Solvent dramatically affects protein structure refinement G Chopra, CM Summa, M Levitt Proceedings of the National Academy of Sciences 105 (51), 20239-20244, 2008 | 127 | 2008 |
An atomic environment potential for use in protein structure prediction CM Summa, M Levitt, WF DeGrado Journal of molecular biology 352 (4), 986-1001, 2005 | 84 | 2005 |
Computational design of a water‐soluble analog of phospholamban AM Slovic, CM Summa, JD Lear, WF DeGrado Protein Science 12 (2), 337-348, 2003 | 71 | 2003 |
Tertiary templates for the design of diiron proteins CM Summa, A Lombardi, M Lewis, WF DeGrado Current Opinion in Structural Biology 9 (4), 500-508, 1999 | 70 | 1999 |
Dn-symmetrical tertiary templates for the design of tubular proteins B North, CM Summa, G Ghirlanda, WF DeGrado Journal of molecular biology 311 (5), 1081-1090, 2001 | 65 | 2001 |
Crosstalk between PKA and Epac regulates the phenotypic maturation and function of human dendritic cells J Garay, JA D’Angelo, YK Park, CM Summa, ML Aiken, E Morales, ... The Journal of Immunology 185 (6), 3227-3238, 2010 | 46 | 2010 |
Anti-HIV double variable domain immunoglobulins binding both gp41 and gp120 for targeted delivery of immunoconjugates RB Craig, CM Summa, M Corti, SH Pincus Public Library of Science 7 (10), e46778, 2012 | 34 | 2012 |
In silico modeling of the cryptic E2∼ ubiquitin–binding site of E6-associated protein (E6AP)/UBE3A reveals the mechanism of polyubiquitin chain assembly VP Ronchi, ED Kim, CM Summa, JM Klein, AL Haas Journal of Biological Chemistry 292 (44), 18006-18023, 2017 | 24 | 2017 |
Computational methods and their applications for de novo functional protein design and membrane protein solubilization CM Summa University of Pennsylvania, 2002 | 22 | 2002 |
Computational design of a water-soluble analog of a protein, such as phospholamban and potassium channel KcsA A Slovic, C Summa, J Saven, W DeGrado, H Kono US Patent App. 10/760,721, 2004 | 21 | 2004 |
Genomic analysis of hypoxia inducible factor alpha in ray-finned fishes reveals missing Ohnologs and evidence of widespread positive selection IK Townley, CH Babin, TE Murphy, CM Summa, BB Rees Scientific Reports 12 (1), 22312, 2022 | 11 | 2022 |
An implementation of replica exchange with dynamical scaling for efficient large-scale simulations SW Rick, GJ Schwing, CM Summa Journal of Chemical Information and Modeling 61 (2), 810-818, 2021 | 8 | 2021 |
Feedback algorithm and web-server for protein structure alignment Z Zhao, B Fu, FJ Alanis, CM Summa Journal of Computational Biology 15 (5), 505-524, 2008 | 8 | 2008 |
Calculations of Absolute Free Energies, Enthalpies, and Entropies for Drug Binding CM Summa, DP Langford, SH Dinshaw, J Webb, SW Rick Journal of Chemical Theory and Computation 20 (7), 2812-2819, 2024 | 1 | 2024 |
Corrigendum: Tertiary templates for the design of diiron proteins CM Summa, A Lombardi, M Lewis, WF DeGrado Current Opinion in Structural Biology 5 (9), 649, 1999 | 1 | 1999 |