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Bingxin Zhou
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Year
How framelets enhance graph neural networks
X Zheng, B Zhou, J Gao, YG Wang, P Lio, M Li, G Montúfar
International Conference on Machine Learning, 2021
772021
Graph denoising diffusion for inverse protein folding
K Yi, B Zhou, Y Shen, P Liò, YG Wang
Thirty-seventh Conference on Neural Information Processing Systems., 2023
452023
Decimated framelet system on graphs and fast G-framelet transforms
X Zheng, B Zhou, YG Wang, X Zhuang
Journal of Machine Learning Research 23 (18), 1-68, 2022
402022
MathNet: Haar-like wavelet multiresolution analysis for graph representation learning
X Zheng, B Zhou, M Li, YG Wang, J Gao
Knowledge-Based Systems 273, 110609, 2023
34*2023
Protein engineering with lightweight graph denoising neural networks
B Zhou, L Zheng, B Wu, Y Tan, O Lv, K Yi, G Fan, L Hong
Journal of Chemical Information and Modeling 64 (9), 3650-3661, 2024
23*2024
Robust Graph Representation Learning for Local Corruption Recovery
B Zhou, Y Jiang, YG Wang, J Liang, J Gao, S Pan, X Zhang
WWW '23: Proceedings of the ACM Web Conference 2023, 438–448, 2023
13*2023
Graph Denoising with Framelet Regularizers
B Zhou, R Li, X Zheng, YG Wang, J Gao
IEEE Transactions on Pattern Analysis and Machine Intelligence, 2024
122024
Semantical and Geometrical Protein Encoding Toward Enhanced Bioactivity and Thermostability
Y Tan, B Zhou, L Zheng, G Fan, L Hong
bioRxiv, 2023.12. 01.569522, 2023
12*2023
Well-conditioned Spectral Transforms for Dynamic Graph Representation
B Zhou, X Liu, Y Liu, Y Huang, P Lio, YG Wang
Proceedings of the First Learning on Graphs Conference 198, 12:1-12:19, 2022
11*2022
How GNNs Facilitate CNNs in Mining Geometric Information from Large-Scale Medical Images
Y Shen, B Zhou, X Xiong, R Gao, YG Wang
2023 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2023
10*2023
Manifold optimization-assisted Gaussian variational approximation
B Zhou, J Gao, MN Tran, R Gerlach
Journal of Computational and Graphical Statistics 30 (4), 946-957, 2021
92021
A conditional protein diffusion model generates artificial programmable endonuclease sequences with enhanced activity
B Zhou, L Zheng, B Wu, K Yi, B Zhong, Y Tan, Q Liu, P Liò, L Hong
Cell Discovery 10 (1), 95, 2024
8*2024
Simple, efficient, and scalable structure-aware adapter boosts protein language models
Y Tan, M Li, B Zhou, B Zhong, L Zheng, P Tan, Z Zhou, H Yu, G Fan, ...
Journal of Chemical Information and Modeling 64 (16), 6338-6349, 2024
82024
Framelet message passing
X Liu, B Zhou, C Zhang, YG Wang
arXiv preprint arXiv:2302.14806, 2023
82023
ProSST: Protein Language Modeling with Quantized Structure and Disentangled Attention
M Li, Y Tan, X Ma, B Zhong, H Yu, Z Zhou, W Ouyang, B Zhou, L Hong, ...
bioRxiv, 2024.04. 15.589672, 2024
72024
Prosst: Protein language modeling with quantized structure and disentangled attention. bioRxiv
M Li, Y Tan, X Ma, B Zhong, H Yu, Z Zhou, W Ouyang, B Zhou, L Hong, ...
52024
ProtSolM: Protein Solubility Prediction with Multi-modal Features
Y Tan, J Zheng, L Hong, B Zhou
2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2024
52024
Embedding graphs on Grassmann manifold
B Zhou, X Zheng, YG Wang, M Li, J Gao
Neural Networks 152, 322-331, 2022
5*2022
Retrieval-enhanced mutation mastery: Augmenting zero-shot prediction of protein language model
Y Tan, R Wang, B Wu, L Hong, B Zhou
arXiv preprint arXiv:2410.21127, 2024
42024
Approximate Equivariance SO (3) Needlet Convolution
K Yi, J Chen, YG Wang, B Zhou, P Liò, Y Fan, J Hamann
Proceedings of Topological, Algebraic, and Geometric Learning Workshops 2022 …, 2022
42022
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