Sabrina de Azevedo Silveira

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Raquel Cardoso de Melo-MinardiUniversidade Federal de Minas GeraisVerified email at dcc.ufmg.br
Alexandre Victor FassioFederal University of Minas GeraisVerified email at ufmg.br
Carlos Henrique da SilveiraProfessor, Federal University of Itajuba - UNIFEIVerified email at unifei.edu.br
Charles Abreu SantanaFederal University of Minas GeraisVerified email at ufmg.br
Sandro Carvalho IzidoroProfessor Engenharia da Computação - UNIFEIVerified email at unifei.edu.br
Pedro Magalhães MartinsDoutorando em bioinformática, Universidade Federal de Minas GeraisVerified email at dcc.ufmg.br
Valdete AlmeidaD.Sc. BioinformaticsVerified email at dcc.ufmg.br
Janet M ThorntonSenior Scientist, European Molecular Biology Laboratory - European Institute of Bioinformatics (EMBLVerified email at ebi.ac.uk
António J M RibeiroLAQV/REQUIMTE - Faculty of Sciences, University of PortoVerified email at fc.up.pt
Wagner Meira, Jr.Professor of Computer Science, Universidade Federal de Minas Gerais, BrazilVerified email at dcc.ufmg.br
Jonathan D. TyzackEMBL-EBIVerified email at ebi.ac.uk
Fabio R. CerqueiraAssociate professor in Computer Science, Universidade Federal Fluminense (UFF)Verified email at id.uff.br
Douglas PiresChief Data Officer, XymeVerified email at xyme.ai
ROBERTO DIASUniversidade Federal de ViçosaVerified email at ufv.br
Sérgio De PaulaUniversidade Federal de ViçosaVerified email at ufv.br
Rafaela Salgado FerreiraBiochemistry and Immunology Department, Universidade Federal de Minas GeraisVerified email at icb.ufmg.br
Mariana T. Quezado de MagalhaesUniversidade Federal de Minas GeraisVerified email at icb.ufmg.br
Giovanni ComarelaUniversidade Federal do Espírito SantoVerified email at inf.ufes.br
Artur Oliveira RodriguesMaster's Student in Computer Science, Universidade Federal de Minas GeraisVerified email at dcc.ufmg.br
Flavia Figueira AburjaileFederal University of Minas GeraisVerified email at ufmg.br

Sabrina de Azevedo Silveira

Professor at Department of Computer Science, Universidade Federal de Viçosa

Verified email at ufv.br

Bioinformatics Machine Learning Data Mining Data Visualization Structural Bioinformatics


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nAPOLI: a graph-based strategy to detect and visualize conserved protein-ligand interactions in large-scale AV Fassio, LH Santos, SA Silveira, RS Ferreira, RC de Melo-Minardi IEEE/ACM transactions on computational biology and bioinformatics 17 (4 …, 2019	44	2019
Propedia: a database for protein–peptide identification based on a hybrid clustering algorithm PM Martins, LH Santos, D Mariano, FC Queiroz, LL Bastos, IS Gomes, ... BMC bioinformatics 22, 1-20, 2021	42	2021
Protein structural bioinformatics: An overview V de Almeida Paiva, I de Souza Gomes, CR Monteiro, MV Mendonça, ... Computers in Biology and Medicine 147, 105695, 2022	39	2022
GRaSP: a graph-based residue neighborhood strategy to predict binding sites CA Santana, SA Silveira, JPA Moraes, SC Izidoro, RC de Melo-Minardi, ... Bioinformatics 36 (Supplement_2), i726-i734, 2020	28	2020
Protein abundance prediction through machine learning methods M Ferreira, R Ventorim, E Almeida, S Silveira, W Silveira Journal of molecular biology 433 (22), 167267, 2021	19	2021
Enzymap: Exploiting protein annotation for modeling and predicting ec number changes in uniprot/swiss-prot SA Silveira, RC de Melo-Minardi, CH da Silveira, MM Santoro, W Meira Jr PloS one 9 (2), e89162, 2014	12	2014
ADVISe: Visualizing the dynamics of enzyme annotations in UniProt/Swiss-Prot SA Silveira, AO Rodrigues, RC de Melo-Minardi, CH da Silveira, W Meira 2012 IEEE Symposium on Biological Data Visualization (BioVis), 49-56, 2012	11	2012
visGReMLIN: graph mining-based detection and visualization of conserved motifs at 3D protein-ligand interface at the atomic level VS Ribeiro, CA Santana, AV Fassio, FR Cerqueira, CH da Silveira, ... BMC bioinformatics 21, 1-12, 2020	10	2020
GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs CA Santana, SC Izidoro, RC de Melo-Minardi, JD Tyzack, AJM Ribeiro, ... Nucleic Acids Research 50 (W1), W392-W397, 2022	9	2022
Vermont: a multi-perspective visual interactive platform for mutational analysis AV Fassio, PM Martins, SS Guimarães, SSA Junior, VS Ribeiro, ... BMC bioinformatics 18, 51-63, 2017	8	2017
Vermont: Visualizing mutations and their effects on protein physicochemical and topological property conservation SA Silveira, AV Fassio, VM Gonçalves-Almeida, EB de Lima, YT Barcelos, ... BMC proceedings 8, 1-10, 2014	8	2014
Computational prediction of potential inhibitors for SARS-COV-2 main protease based on machine learning, docking, MM-PBSA calculations, and metadynamics IS Gomes, CA Santana, LS Marcolino, LHF Lima, RC Melo-Minardi, ... PLoS One 17 (4), e0267471, 2022	7	2022
Gremlin: A graph mining strategy to infer protein-ligand interaction patterns CA Santana, FR Cerqueira, CH Da Silveira, AV Fassio, ... 2016 IEEE 16th International Conference on Bioinformatics and Bioengineering …, 2016	7	2016
GASS-Metal: identifying metal-binding sites on protein structures using genetic algorithms VA Paiva, MV Mendonça, SA Silveira, DB Ascher, DEV Pires, SC Izidoro Briefings in Bioinformatics 23 (5), bbac178, 2022	6	2022
ppiGReMLIN: a graph mining based detection of conserved structural arrangements in protein-protein interfaces FC Queiroz, AMP Vargas, MGA Oliveira, GV Comarela, SA Silveira BMC bioinformatics 21, 1-25, 2020	6	2020
How to compute protein residue contacts more accurately? PM Martins, VD Mayrink, S de A. Silveira, CH da Silveira, LHF de Lima, ... Proceedings of the 33rd Annual ACM Symposium on Applied Computing, 60-67, 2018	6	2018
Synthesis and virucide activity on zika virus of 1, 2, 3-triazole-containing vanillin derivatives JV da Silva Rodrigues, PAR Gazolla, I da Cruz Pereira, RS Dias, ... Antiviral Research 212, 105578, 2023	5	2023
Synthesis and virucide activity on zika virus of 1, 2, 3-triazole-containing vanillin derivatives IE Poly da Silva, JW Oliveira Prates, I de Souza Gomes, ... Antiviral Res 212, 105578, 2023	5	2023
RLPredictiOme, a Machine Learning-Derived Method for High-Throughput Prediction of Plant Receptor-like Proteins, Reveals Novel Classes of Transmembrane Receptors JCF Silva, MA Ferreira, TFM Carvalho, FF Silva, S de A. Silveira, ... International Journal of Molecular Sciences 23 (20), 12176, 2022	5	2022
Revealing protein-ligand interaction patterns through frequent subgraph mining SA Silveira, AV Fassio, CH da Silveira, RC de Melo-Minardi Proceedings of the International Conference on Bioinformatics …, 2015	4	2015

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