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Han Zhang
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A mechanism for the activation of the mechanosensitive Piezo1 channel by the small molecule Yoda1
WM Botello-Smith, W Jiang, H Zhang, AD Ozkan, YC Lin, CN Pham, ...
Nature communications 10 (1), 4503, 2019
2282019
CHARMM-GUI free energy calculator for absolute and relative ligand solvation and binding free energy simulations
S Kim, H Oshima, H Zhang, NR Kern, S Re, J Lee, B Roux, Y Sugita, ...
Journal of chemical theory and computation 16 (11), 7207-7218, 2020
862020
PRMT1-mediated FLT3 arginine methylation promotes maintenance of FLT3-ITD+ acute myeloid leukemia
X He, Y Zhu, YC Lin, M Li, J Du, H Dong, J Sun, L Zhu, H Wang, Z Ding, ...
Blood, The Journal of the American Society of Hematology 134 (6), 548-560, 2019
842019
Can relative binding free energy predict selectivity of reversible covalent inhibitors?
P Chatterjee, WM Botello-Smith, H Zhang, L Qian, A Alsamarah, D Kent, ...
Journal of the American Chemical Society 139 (49), 17945-17952, 2017
542017
Ranking reversible covalent drugs: from free energy perturbation to fragment docking
H Zhang, W Jiang, P Chatterjee, Y Luo
Journal of chemical information and modeling 59 (5), 2093-2102, 2019
502019
Crowding-induced opening of the mechanosensitive Piezo1 channel in silico
W Jiang, JS Del Rosario, W Botello-Smith, S Zhao, Y Lin, H Zhang, ...
Communications Biology 4 (1), 84, 2021
482021
Methotrexate recognition by the human reduced folate carrier SLC19A1
NJ Wright, JG Fedor, H Zhang, P Jeong, Y Suo, J Yoo, J Hong, W Im, ...
Nature 609 (7929), 1056-1062, 2022
442022
CHARMM-GUI free energy calculator for practical ligand binding free energy simulations with AMBER
H Zhang, S Kim, TJ Giese, TS Lee, J Lee, DM York, W Im
Journal of chemical information and modeling 61 (9), 4145-4151, 2021
372021
Targeting PRMT1-mediated FLT3 methylation disrupts maintenance of MLL-rearranged acute lymphoblastic leukemia
Y Zhu, X He, YC Lin, H Dong, L Zhang, X Chen, Z Wang, Y Shen, M Li, ...
Blood, The Journal of the American Society of Hematology 134 (15), 1257-1268, 2019
362019
CHARMM‐GUI high‐throughput simulator for efficient evaluation of protein–ligand interactions with different force fields
H Guterres, SJ Park, H Zhang, T Perone, J Kim, W Im
Protein Science 31 (9), e4413, 2022
222022
The connexin26 human mutation N14K disrupts cytosolic intersubunit interactions and promotes channel opening
JM Valdez Capuccino, P Chatterjee, IE García, WM Botello-Smith, ...
Journal of General Physiology 151 (3), 328-341, 2019
182019
CHARMM‐GUI Enhanced Sampler for various collective variables and enhanced sampling methods
D Suh, S Feng, H Lee, H Zhang, SJ Park, S Kim, J Lee, S Choi, W Im
Protein Science 31 (11), e4446, 2022
162022
Structural and thermodynamic framework for PIEZO1 modulation by small molecules
W Jiang, TD Wijerathne, H Zhang, YC Lin, S Jo, W Im, JJ Lacroix, YL Luo
Proceedings of the National Academy of Sciences 120 (50), e2310933120, 2023
122023
Practical Guidance for Consensus Scoring and Force Field Selection in Protein–Ligand Binding Free Energy Simulations
H Zhang, S Kim, W Im
Journal of chemical information and modeling 62 (23), 6084-6093, 2022
122022
CHARMM-GUI LBS Finder & Refiner for Ligand Binding Site Prediction and Refinement
H Guterres, SJ Park, H Zhang, W Im
Journal of chemical information and modeling 61 (8), 3744-3751, 2021
102021
CHARMM-GUI implicit solvent modeler for various generalized born models in different simulation programs
KW Wang, J Lee, H Zhang, D Suh, W Im
The Journal of Physical Chemistry B 126 (38), 7354-7364, 2022
82022
Alterations at Arg76 of human connexin 46, a residue associated with cataract formation, cause loss of gap junction formation but preserve hemichannel function
CK Abrams, A Peinado, R Mahmoud, M Bocarsly, H Zhang, P Chang, ...
American Journal of Physiology-Cell Physiology 315 (5), C623-C635, 2018
82018
Binding Free Energies of Piezo1 Channel Agonists at Protein-Membrane Interface
W Jiang, H Zhang, W Im, JJ Lacroix, YL Luo
bioRxiv, 2022.06. 27.497657, 2022
22022
CHARMM-GUI Enhanced Sampler for molecular dynamics simulations with collective variables and various enhanced sampling methods
D Suh, S Feng, S Kim, H Lee, SJ Park, H Zhang, S Choi, K Wang, J Lee, ...
Biophysical Journal 121 (3), 274a, 2022
22022
CHARMM-GUI constant-pH simulator for the constant-pH molecular dynamics simulations
D Suh, H Zhang, W Im
Biophysical Journal 123 (3), 423a, 2024
12024
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