Nuno R. Faria

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Oliver PybusUniversity of Oxford / Royal Veterinary CollegeVerified email at zoo.ox.ac.uk
Ester Cerdeira SabinoFull Professor Department of Pathology, Faculdade de Medicina da Universidade de Sao PauloVerified email at usp.br
Philippe LemeyFull Professor, KU LeuvenVerified email at kuleuven.be
Moritz U G KraemerProfessor, University of OxfordVerified email at biology.ox.ac.uk
Marc A. SuchardProfessor, University of California, Los AngelesVerified email at ucla.edu
Andrew RambautProfessor of Molecular Evolution, University of EdinburghVerified email at ed.ac.uk
Darlan CandidoResearch Associate, Imperial College LondonVerified email at ic.ac.uk
Ingra M. ClaroMRC Centre for Global Infectious Disease Analysis and the Abdul Latif Jameel Institute for Disease aVerified email at ic.ac.uk
Christopher DyeUniversity of OxfordVerified email at zoo.ox.ac.uk
Dr Lewis Fletcher BussCentre for Academic Primary Care, Univeristy of BristolVerified email at bristol.ac.uk
Nicholas J LomanProfessor of Microbial Genomics and Bioinformatics, University of BirminghamVerified email at bham.ac.uk
Simon DellicourUniversity of Bruxelles (ULB), University of Leuven (KU Leuven)Verified email at ulb.ac.be
John BrownsteinHarvard Medical SchoolVerified email at harvard.edu
Jaqueline Goes de JesusUniversidade de São PauloVerified email at bahiana.edu.br
William Marciel de SouzaUniversity of KentuckyVerified email at uky.edu
Andreza Aruska De Souza SantosKing's College London, Director of the King's Brazil InstituteVerified email at kcl.ac.uk
Ana AbecasisGlobal Health and Tropical Medicine, Instituto de Higiene e Medicina Tropical, NOVA Univ LisboaVerified email at ihmt.unl.pt
Kris V ParagMRC career development award fellow, Imperial College LondonVerified email at imperial.ac.uk
Rafael H. M. PereiraIpea - Institute for Applied Economic ResearchVerified email at ipea.gov.br
Trevor BedfordProfessor, Fred Hutchinson Cancer CenterVerified email at bedford.io

Nuno R. Faria

Professor, Imperial College London / University of São Paulo

Verified email at ic.ac.uk - Homepage

Virus Evolution Genomic Epidemiology Molecular Evolution Virology Phylogenetics


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The effect of human mobility and control measures on the COVID-19 epidemic in China MUG Kraemer, CH Yang, B Gutierrez, CH Wu, B Klein, DM Pigott, ... Science 368 (64), 493-497, 2020	3307	2020
Genomics and epidemiology of the P.1 SARS-CoV-2 lineage in Manaus, Brazil NR Faria, TA Mellan, C Whittaker, IM Claro, DS Candido, S Mishra, ... Science 372 (6544), 815-821, 2021	1771*	2021
Zika virus in the Americas: early epidemiological and genetic findings NR Faria, RSS Azevedo, MUG Kraemer, R Souza, MS Cunha, SC Hill, ... Science 352 (6283), 345-9, 2016	1273	2016
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ... Nature protocols 12 (6), 1261-1276, 2017	1177	2017
Past and future spread of the arbovirus vectors Aedes aegypti and Aedes albopictus MUG Kraemer, RC Reiner Jr, OJ Brady, JP Messina, M Gilbert, DM Pigott, ... Nature Microbiology 4 (5), 901-901, 2019	1067	2019
The early spread and epidemic ignition of HIV-1 in human populations NR Faria, A Rambaut, MA Suchard, G Baele, T Bedford, M Ward, ... Science 346 (6205), 56-61, 2014	1058	2014
Resurgence of COVID-19 in Manaus, Brazil, despite high seroprevalence EC Sabino, LF Buss, MPS Carvalho, CA Prete Jr, MAE Crispim, NA Fraiji, ... The Lancet 397 (102), 452-455, 2021	967	2021
Evolution and epidemic spread of SARS-CoV-2 in Brazil DS Candido, IM Claro, JG de Jesus, WM de Souza, FRR Moreira, ... Science 369 (6508), 1255-1260, 2020	711	2020
Establishment and cryptic transmission of Zika virus in Brazil and the Americas NR Faria, J Quick, I Morales, J Theze, JG de Jesus, M Giovanetti, ... Nature 546, 406-410, 2017	661	2017
Emergence and potential for spread of Chikungunya virus in Brazil MRT Nunes, NR Faria, JM de Vasconcelos, N Golding, MUG Kraemer, ... BMC Medicine 13 (1), 1, 2015	638	2015
Three-quarters attack rate of SARS-CoV-2 in the Brazilian Amazon during a largely unmitigated epidemic LF Buss, CA Prete, CMM Abrahim, A Mendrone, T Salomon, ... Science 371 (6526), 288-292, 2021	596	2021
Improving Bayesian population dynamics inference: a coalescent-based model for multiple loci MS Gill, P Lemey, NR Faria, A Rambaut, B Shapiro, MA Suchard Molecular Biology and Evolution 30 (3), 713-724, 2013	554	2013
Epidemiological and clinical characteristics of the early phase of the COVID-19 epidemic in Brazil WM de Souza, LF Buss, D da Silva Candido, JP Carrera, S Li, A Zarebski, ... Nature Human Behaviour, 856-865, 2020	488	2020
Virus genomes reveal factors that spread and sustained the Ebola epidemic G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ... Nature 544 (7650), 309-315, 2017	473	2017
Unifying viral genetics and human transportation data to predict the global transmission dynamics of human influenza H3N2 P Lemey, A Rambaut, T Bedford, NR Faria, F Bielejec, G Baele, ... PloS Pathogens 10 (2), e1003932, 2014	442	2014
Genomic characterisation of an emergent SARS-CoV-2 lineage in Manaus: preliminary findings NR Faria, IM Claro, D Candido, LAM Franco, PS Andrade, TM Coletti, ... Virological 372, 815-821, 2021	441	2021
Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: performance evaluation of the new REGA version 3 and seven other tools AC Pineda-Peña, NR Faria, S Imbrechts, P Libin, AB Abecasis, ... Infect Genet Evol 19, 337-348, 2013	431	2013
Establishment and lineage dynamics of the SARS-CoV-2 epidemic in the UK L du Plessis, JT McCrone, AE Zarebski, V Hill, C Ruis, B Gutierrez, ... Science, eabf2946, 2021	406	2021
Genomic epidemiology reveals multiple introductions of Zika virus into the United States ND Grubaugh, JT Ladner, MUG Kraemer, G Dudas, AL Tan, ... Nature, 104794, 2017	387	2017
Genomic and epidemiological monitoring of yellow fever virus transmission potential NR Faria, MUG Kraemer, S Hill, JG de Jesus, RS de Aguiar, FCM Iani, ... Science 7115 (eaat7115), 2018	350*	2018

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