| Molecular identity of human outer radial glia during cortical development AA Pollen, TJ Nowakowski, J Chen, H Retallack, C Sandoval-Espinosa, ... Cell 163 (1), 55-67, 2015 | 884 | 2015 |
| Spatiotemporal gene expression trajectories reveal developmental hierarchies of the human cortex TJ Nowakowski, A Bhaduri, AA Pollen, B Alvarado, MA Mostajo-Radji, ... Science 358 (6368), 1318-1323, 2017 | 880 | 2017 |
| CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells SJ Liu, MA Horlbeck, SW Cho, HS Birk, M Malatesta, D He, FJ Attenello, ... Science 355 (6320), eaah7111, 2017 | 788 | 2017 |
| Pluripotency factors in embryonic stem cells regulate differentiation into germ layers M Thomson, SJ Liu, LN Zou, Z Smith, A Meissner, S Ramanathan Cell 145 (6), 875-889, 2011 | 694 | 2011 |
| Single-cell profiling of human gliomas reveals macrophage ontogeny as a basis for regional differences in macrophage activation in the tumor microenvironment S Müller, G Kohanbash, SJ Liu, B Alvarado, D Carrera, A Bhaduri, ... Genome biology 18, 1-14, 2017 | 615 | 2017 |
| Long noncoding RNAs in cancer metastasis SJ Liu, HX Dang, DA Lim, FY Feng, CA Maher Nature Reviews Cancer 21 (7), 446-460, 2021 | 509 | 2021 |
| Promoter of lncRNA gene PVT1 is a tumor-suppressor DNA boundary element SW Cho, J Xu, R Sun, MR Mumbach, AC Carter, YG Chen, KE Yost, J Kim, ... Cell 173 (6), 1398-1412. e22, 2018 | 444 | 2018 |
| Single-cell analysis of long non-coding RNAs in the developing human neocortex SJ Liu, TJ Nowakowski, AA Pollen, JH Lui, MA Horlbeck, FJ Attenello, ... Genome biology 17, 1-17, 2016 | 379 | 2016 |
| The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells AD Ramos, RE Andersen, SJ Liu, TJ Nowakowski, SJ Hong, CC Gertz, ... Cell stem cell 16 (4), 439-447, 2015 | 356 | 2015 |
| Outer radial glia-like cancer stem cells contribute to heterogeneity of glioblastoma A Bhaduri, E Di Lullo, D Jung, S Müller, EE Crouch, CS Espinosa, ... Cell stem cell 26 (1), 48-63. e6, 2020 | 324 | 2020 |
| Meningioma DNA methylation groups identify biological drivers and therapeutic vulnerabilities A Choudhury, ST Magill, CD Eaton, BC Prager, WC Chen, MA Cady, ... Nature genetics 54 (5), 649-659, 2022 | 175 | 2022 |
| Activation of neuronal gene expression by the JMJD3 demethylase is required for postnatal and adult brain neurogenesis DH Park, SJ Hong, RD Salinas, SJ Liu, SW Sun, J Sgualdino, G Testa, ... Cell reports 8 (5), 1290-1299, 2014 | 145 | 2014 |
| CONICS integrates scRNA-seq with DNA sequencing to map gene expression to tumor sub-clones S Müller, A Cho, SJ Liu, DA Lim, A Diaz Bioinformatics 34 (18), 3217-3219, 2018 | 111 | 2018 |
| Single‐cell sequencing maps gene expression to mutational phylogenies in PDGF‐and EGF‐driven gliomas S Müller, SJ Liu, E Di Lullo, M Malatesta, AA Pollen, TJ Nowakowski, ... Molecular systems biology 12 (11), 889, 2016 | 110 | 2016 |
| CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma SJ Liu, M Malatesta, BV Lien, P Saha, SS Thombare, SJ Hong, L Pedraza, ... Genome biology 21, 1-18, 2020 | 105 | 2020 |
| Multiplatform genomic profiling and magnetic resonance imaging identify mechanisms underlying intratumor heterogeneity in meningioma ST Magill, HN Vasudevan, K Seo, JE Villanueva-Meyer, A Choudhury, ... Nature communications 11 (1), 4803, 2020 | 90 | 2020 |
| Logic integration of mRNA signals by an RNAi-based molecular computer Z Xie, SJ Liu, L Bleris, Y Benenson Nucleic acids research 38 (8), 2692-2701, 2010 | 84 | 2010 |
| Modulating the expression of long non‐coding RNA s for functional studies SJ Liu, DA Lim EMBO reports 19 (12), e46955, 2018 | 81 | 2018 |
| Reirradiation and PD-1 inhibition with nivolumab for the treatment of recurrent diffuse intrinsic pontine glioma: a single-institution experience C Kline, SJ Liu, S Duriseti, A Banerjee, T Nicolaides, S Raber, N Gupta, ... Journal of neuro-oncology 140, 629-638, 2018 | 80 | 2018 |
| The long noncoding RNA Pnky is a trans-acting regulator of cortical development in vivo RE Andersen, SJ Hong, JJ Lim, M Cui, BA Harpur, E Hwang, RN Delgado, ... Developmental cell 49 (4), 632-642. e7, 2019 | 69 | 2019 |
Daniel A. LimUniversity of California, San FranciscoVerified email at ucsf.edu