Christophe Dessimoz

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Adrian AltenhoffETH ZurichVerified email at inf.ethz.ch
Natasha GloverSwiss Institute of Bioinformatics, University of LausanneVerified email at unil.ch
Alex Warwick VesztrocyBioSoft Research UKVerified email at biosoft-research.co.uk
Gaston H. GonnetProfessor Emeritus of Computer Science at the ETH ZurichVerified email at inf.ethz.ch
Manuel GilCo-director Centre of Bioinformatics, ZHAWVerified email at zhaw.ch
David DylusSenior Scientist, Systems Biology, RocheVerified email at roche.com
Clément - Marie TrainPhD student, UNIL LausannneVerified email at unil.ch
Yannis NeversUniversity of LausanneVerified email at unil.ch
Maria AnisimovaHead of Applied Computational Genomics, ZHAWVerified email at zhaw.ch
Tarcisio Mendes De FariasCo-Team Lead, Knowledge Representation Unit at SIB Swiss Institute of BioinformaticsVerified email at sib.swiss
Nick GoldmanEMBL-European Bioinformatics InstituteVerified email at ebi.ac.uk
Fritz J SedlazeckHuman Genome Sequencing Center, Baylor College of Medicine, One Baylor Plaza, Houston TX 77030Verified email at bcm.edu
David MoiUniversity of LausanneVerified email at unil.ch
Toni GabaldonGroup Leader, Institute for Research in Biomedicine (IRB), Barcelona Supercomputing Centre (BSC)Verified email at crg.es
Marc Robinson-RechaviProfessor of Bioinformatics, Department of Ecology and Evolution UNIL, & Group leader SIBVerified email at unil.ch
Erik SonnhammerProfessor of Bioinformatics, DBB Stockholm University, Science for Life LaboratoryVerified email at scilifelab.se
Bartlomiej TomiczekUniversity of GdanskVerified email at ug.edu.pl
Henning RedestigData scientist, Genencor InternationalVerified email at iff.com
Daniel A. DalquenResearch Associate, University College LondonVerified email at ucl.ac.uk
Telford MJUniversity College LondonVerified email at ucl.ac.uk

Christophe Dessimoz

Professor at UNIL and Director of SIB Swiss Institute of Bioinformatics

Verified email at unil.ch - Homepage

Bioinformatics Computational Biology Phylogenetics Molecular Evolution Comparative Genomics


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Phylogenetic ctDNA analysis depicts early-stage lung cancer evolution C Abbosh, NJ Birkbak, GA Wilson, M Jamal-Hanjani, T Constantin, ... Nature 545 (7655), 446-451, 2017	1842	2017
Towards practical, high-capacity, low-maintenance information storage in synthesized DNA N Goldman, P Bertone, S Chen, C Dessimoz, EM LeProust, B Sipos, ... nature 494 (7435), 77-80, 2013	1327	2013
Allele-specific HLA loss and immune escape in lung cancer evolution N McGranahan, R Rosenthal, CT Hiley, AJ Rowan, TBK Watkins, ... Cell 171 (6), 1259-1271. e11, 2017	1298	2017
Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel Systematic biology 60 (5), 685-699, 2011	1149	2011
GOATOOLS: A Python library for Gene Ontology analyses DV Klopfenstein, L Zhang, BS Pedersen, F Ramírez, A Warwick Vesztrocy, ... Scientific reports 8 (1), 1-17, 2018	940	2018
Approximate bayesian computation M Sunnåker, AG Busetto, E Numminen, J Corander, M Foll, C Dessimoz PLoS computational biology 9 (1), e1002803, 2013	754	2013
Structural variant calling: the long and the short of it M Mahmoud, N Gobet, DI Cruz-Dávalos, N Mounier, C Dessimoz, ... Genome biology 20, 1-14, 2019	646	2019
Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast DC Jeffares, C Jolly, M Hoti, D Speed, L Shaw, C Rallis, F Balloux, ... Nature communications 8 (1), 14061, 2017	608	2017
Phylogenetic and functional assessment of orthologs inference projects and methods AM Altenhoff, C Dessimoz PLoS computational biology 5 (1), e1000262, 2009	473	2009
An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D'Andrea, R Lepore, ... Genome Biology 17, 184, 2016	444	2016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ... Genome biology 20, 1-23, 2019	426	2019
Base-calling for next-generation sequencing platforms C Ledergerber, C Dessimoz Briefings in bioinformatics 12 (5), 489-497, 2011	327	2011
Inferring horizontal gene transfer M Ravenhall, N Škunca, F Lassalle, C Dessimoz PLoS computational biology 11 (5), e1004095, 2015	291	2015
Resolving the ortholog conjecture: orthologs tend to be weakly, but significantly, more similar in function than paralogs AM Altenhoff, RA Studer, M Robinson-Rechavi, C Dessimoz PLoS computational biology 8 (5), e1002514, 2012	269	2012
Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference G Tan, M Muffato, C Ledergerber, J Herrero, N Goldman, M Gil, ... Systematic biology 64 (5), 778-791, 2015	263	2015
OMA 2011: orthology inference among 1000 complete genomes AM Altenhoff, A Schneider, GH Gonnet, C Dessimoz Nucleic acids research 39 (suppl_1), D289-D294, 2010	254	2010
The OMA orthology database in 2018: retrieving evolutionary relationships among all domains of life through richer web and programmatic interfaces AM Altenhoff, NM Glover, CM Train, K Kaleb, A Warwick Vesztrocy, ... Nucleic acids research 46 (D1), D477-D485, 2018	247	2018
Phylo.io: interactive viewing and comparison of large phylogenetic trees on the web O Robinson, D Dylus, C Dessimoz Molecular Biology and Evolution, 2016	247	2016
The OMA orthology database in 2015: function predictions, better plant support, synteny view and other improvements AM Altenhoff, N Škunca, N Glover, CM Train, A Sueki, I Piližota, K Gori, ... Nucleic acids research 43 (D1), D240-D249, 2015	246	2015
Standardized benchmarking in the quest for orthologs AM Altenhoff, B Boeckmann, S Capella-Gutierrez, DA Dalquen, T DeLuca, ... Nature methods 13 (5), 425-430, 2016	240	2016

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