| MicrobeAnnotator: a user-friendly, comprehensive functional annotation pipeline for microbial genomes CA Ruiz-Perez, RE Conrad, KT Konstantinidis BMC bioinformatics 22, 1-16, 2021 | 98 | 2021 |
| Reply to:“Re-evaluating the evidence for a universal genetic boundary among microbial species” LM Rodriguez-R, C Jain, RE Conrad, S Aluru, KT Konstantinidis Nature communications 12 (1), 4060, 2021 | 77 | 2021 |
| Gene-rich UV sex chromosomes harbor conserved regulators of sexual development SB Carey, J Jenkins, JT Lovell, F Maumus, A Sreedasyam, AC Payton, ... Science Advances 7 (27), eabh2488, 2021 | 77 | 2021 |
| An ANI gap within bacterial species that advances the definitions of intra-species units LM Rodriguez-R, RE Conrad, T Viver, DJ Feistel, BG Lindner, SN Venter, ... Mbio, e02696-23, 2023 | 65 | 2023 |
| Fecal microbiota transplantation promotes reduction of antimicrobial resistance by strain replacement MH Woodworth, RE Conrad, M Haldopoulos, SM Pouch, A Babiker, ... Science translational medicine 15 (720), eabo2750, 2023 | 39 | 2023 |
| Towards estimating the number of strains that make up a natural bacterial population T Viver, RE Conrad, LM Rodriguez-R, AS Ramírez, SN Venter, ... Nature Communications 15 (1), 544, 2024 | 31 | 2024 |
| Toward quantifying the adaptive role of bacterial pangenomes during environmental perturbations RE Conrad, T Viver, JF Gago, JK Hatt, F Venter, R Rosselló-Móra, ... The ISME journal 16, 1222–1234, 2021 | 28 | 2021 |
| Distinct ecotypes within a natural haloarchaeal population enable adaptation to changing environmental conditions without causing population sweeps T Viver, RE Conrad, LH Orellana, M Urdiain, JE González-Pastor, JK Hatt, ... The ISME Journal 15 (4), 1178-1191, 2021 | 23 | 2021 |
| Description of two cultivated and two uncultivated new Salinibacter species, one named following the rules of the bacteriological code: Salinibacter grassmerensis sp. nov.; and … T Viver, RE Conrad, M Lucio, M Harir, M Urdiain, JF Gago, ... Systematic and Applied Microbiology 46 (3), 126416, 2023 | 18 | 2023 |
| Toward shotgun metagenomic approaches for microbial source tracking sewage spills based on laboratory mesocosms BG Lindner, B Suttner, KJ Zhu, RE Conrad, LM Rodriguez-R, JK Hatt, ... Water Research 210, 117993, 2022 | 18 | 2022 |
| Solar salterns as model systems to study the units of bacterial diversity that matter for ecosystem functioning KT Konstantinidis, T Viver, RE Conrad, SN Venter, R Rossello-Mora Current Opinion in Biotechnology 73, 151-157, 2022 | 15 | 2022 |
| Description of two cultivated and two uncultivated new T Viver, RE Conrad, M Lucio, M Harir, M Urdiain, JF Gago, ... Salinibacter, 2023 | 12 | 2023 |
| The Ceratodon purpureus genome uncovers structurally complex, gene rich sex chromosomes SB Carey, J Jenkins, JT Lovell, F Maumus, A Sreedasyam, AC Payton, ... bioRxiv, 2020.07. 03.163634, 2020 | 10 | 2020 |
| Towards estimating the number of strains that make up a natural bacterial population. Nat Commun 15: 544 T Viver, RE Conrad, LM Rodriguez-R, AS Ramírez, SN Venter, ... | 9 | 2024 |
| Sulfur oxidation and reduction are coupled to nitrogen fixation in the roots of the salt marsh foundation plant Spartina alterniflora JL Rolando, M Kolton, T Song, Y Liu, P Pinamang, R Conrad, JT Morris, ... Nature Communications 15 (1), 3607, 2024 | 6 | 2024 |
| Reply to:“re-evaluating the evidence for a universal genetic boundary among microbial species” Nat Commun 12: 4060 LM Rodriguez-R, C Jain, RE Conrad, S Aluru, KT Konstantinidis | 6 | 2021 |
| Fecal microbiota transplantation promotes reduction of antimicrobial resistance by strain replacement. Sci Transl Med 15: eabo2750 MH Woodworth, RE Conrad, M Haldopoulos, SM Pouch, A Babiker, ... | 5 | 2023 |
| ROCker models for reliable detection and typing of short-read sequences carrying β-Lactamase genes SY Zhang, B Suttner, LM Rodriguez-R, LH Orellana, RE Conrad, F Liu, ... Msystems 7 (3), e01281-21, 2022 | 5 | 2022 |
| RecruitPlotEasy: An advanced read recruitment plot tool for assessing metagenomic population abundance and genetic diversity K Gerhardt, CA Ruiz-Perez, LM Rodriguez-R, RE Conrad, ... Frontiers in Bioinformatics 1, 826701, 2022 | 5 | 2022 |
| Chromosome fusions shape an ancient UV sex chromosome system SB Carey, J Jenkins, AC Payton, S Shu, JT Lovell, F Maumus, ... bioRxiv, 2020 | 5 | 2020 |
Kostas KonstantinidisGeorgia TechVerified email at ce.gatech.edu