| Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs A Kapusta, Z Kronenberg, VJ Lynch, X Zhuo, LA Ramsay, G Bourque, ... PLoS genetics 9 (4), e1003470, 2013 | 738 | 2013 |
| WashU epigenome browser update 2022 D Li, D Purushotham, JK Harrison, S Hsu, X Zhuo, C Fan, S Liu, V Xu, ... Nucleic acids research 50 (W1), W774-W781, 2022 | 106 | 2022 |
| Co-opted transposons help perpetuate conserved higher-order chromosomal structures MNK Choudhary, RZ Friedman, JT Wang, HS Jang, X Zhuo, T Wang Genome biology 21, 1-14, 2020 | 103 | 2020 |
| The NIEHS TaRGET II Consortium and environmental epigenomics T Wang, EC Pehrsson, D Purushotham, D Li, X Zhuo, B Zhang, ... Nature biotechnology 36 (3), 225-227, 2018 | 95 | 2018 |
| Cross-species transmission and differential fate of an endogenous retrovirus in three mammal lineages X Zhuo, C Feschotte PLoS pathogens 11 (11), e1005279, 2015 | 56 | 2015 |
| Domestic chickens activate a piRNA defense against avian leukosis virus YH Sun, LH Xie, X Zhuo, Q Chen, D Ghoneim, B Zhang, J Jagne, C Yang, ... Elife 6, e24695, 2017 | 54 | 2017 |
| Genome-wide characterization of endogenous retroviruses in the bat Myotis lucifugus reveals recent and diverse infections X Zhuo, M Rho, C Feschotte Journal of virology 87 (15), 8493-8501, 2013 | 45 | 2013 |
| Conserved and divergent gene regulatory programs of the mammalian neocortex NR Zemke, EJ Armand, W Wang, S Lee, J Zhou, YE Li, H Liu, W Tian, ... Nature 624 (7991), 390-402, 2023 | 34 | 2023 |
| Exploring the coronavirus pandemic with the WashU Virus Genome Browser JA Flynn, D Purushotham, MNK Choudhary, X Zhuo, C Fan, G Matt, D Li, ... Nature genetics, 1-6, 2020 | 15* | 2020 |
| Functional characterization of enhancer activity during a long terminal repeat's evolution AY Du, X Zhuo, V Sundaram, NO Jensen, HG Chaudhari, NL Saccone, ... Genome research 32 (10), 1840-1851, 2022 | 10 | 2022 |
| Regulatory transposable elements in the encyclopedia of DNA elements AY Du, JD Chobirko, X Zhuo, C Feschotte, T Wang Nature communications 15 (1), 7594, 2024 | 9 | 2024 |
| Epigenomic differences in the human and chimpanzee genomes are associated with structural variation X Zhuo, AY Du, EC Pehrsson, D Li, T Wang Genome research 31 (2), 279-290, 2021 | 9 | 2021 |
| Amniotes co-opt intrinsic genetic instability to protect germ-line genome integrity YH Sun, H Cui, C Song, JT Shen, X Zhuo, RH Wang, X Yu, R Ndamba, ... Nature communications 14 (1), 812, 2023 | 7 | 2023 |
| Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser X Zhuo, S Hsu, D Purushotham, PK Kuntala, JK Harrison, AY Du, S Chen, ... Genome research 33 (5), 824-835, 2023 | 6 | 2023 |
| Modbed track: Visualization of modified bases in single-molecule sequencing D Li, X Zhuo, JK Harrison, S Liu, T Wang Cell Genomics 3 (12), 2023 | 1 | 2023 |
| methylGrapher: genome-graph-based processing of DNA methylation data from whole genome bisulfite sequencing W Zhang, JF Macias-Velasco, X Zhuo, EA Belter Jr, C Tomlinson, J Garza, ... Nucleic Acids Research 53 (3), gkaf028, 2025 | | 2025 |
| Characterizing cytosine methylation of polymorphic human transposable element insertions using human pangenome resources X Zhuo, C Tomlinson, EA Belter Jr, PK Kuntala, WN Saintilnord, T Lindsay, ... bioRxiv, 2024.11. 22.623804, 2024 | | 2024 |
| Endogenous retrovirus evolution in mammalian genomes X Zhuo The University of Utah, 2017 | | 2017 |