| Survey of branch support methods demonstrates accuracy, power, and robustness of fast likelihood-based approximation schemes M Anisimova, M Gil, JF Dufayard, C Dessimoz, O Gascuel Systematic biology 60 (5), 685-699, 2011 | 1147 | 2011 |
| β-AMYLASE4, a Noncatalytic Protein Required for Starch Breakdown, Acts Upstream of Three Active β-Amylases in Arabidopsis Chloroplasts DC Fulton, M Stettler, T Mettler, CK Vaughan, J Li, P Francisco, M Gil, ... The Plant Cell 20 (4), 1040-1058, 2008 | 384 | 2008 |
| Current methods for automated filtering of multiple sequence alignments frequently worsen single-gene phylogenetic inference G Tan, M Muffato, C Ledergerber, J Herrero, N Goldman, M Gil, ... Systematic biology 64 (5), 778-791, 2015 | 263 | 2015 |
| Inferring hierarchical orthologous groups from orthologous gene pairs AM Altenhoff, M Gil, GH Gonnet, C Dessimoz PloS one 8 (1), e53786, 2013 | 180 | 2013 |
| Phylogenetic assessment of alignments reveals neglected tree signal in gaps C Dessimoz, M Gil Genome biology 11, 1-9, 2010 | 149 | 2010 |
| CodonPhyML: fast maximum likelihood phylogeny estimation under codon substitution models M Gil, MS Zanetti, S Zoller, M Anisimova Molecular biology and evolution 30 (6), 1270-1280, 2013 | 117 | 2013 |
| OMA, a comprehensive, automated project for the identification of orthologs from complete genome data: introduction and first achievements C Dessimoz, G Cannarozzi, M Gil, D Margadant, A Roth, A Schneider, ... Comparative Genomics: RECOMB 2005 International Workshop, RCG 2005, Dublin …, 2005 | 101 | 2005 |
| Querying knowledge graphs in natural language S Liang, K Stockinger, TM De Farias, M Anisimova, M Gil Journal of big Data 8 (1), 3, 2021 | 82 | 2021 |
| Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment S Iantorno, K Gori, N Goldman, M Gil, C Dessimoz Multiple sequence alignment methods, 59-73, 2014 | 69 | 2014 |
| Enabling semantic queries across federated bioinformatics databases AC Sima, T Mendes de Farias, E Zbinden, M Anisimova, M Gil, ... Database 2019, baz106, 2019 | 56 | 2019 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 52 | 2016 |
| Progressive multiple sequence alignment with indel evolution M Maiolo, X Zhang, M Gil, M Anisimova BMC bioinformatics 19, 1-8, 2018 | 31 | 2018 |
| Simple chained guide trees give poorer multiple sequence alignments than inferred trees in simulation and phylogenetic benchmarks G Tan, M Gil, AP Löytynoja, N Goldman, C Dessimoz Proceedings of the National Academy of Sciences 112 (2), E99-E100, 2015 | 22 | 2015 |
| The cerebellum chip: an analog VLSI implementation of a cerebellar model of classical conditioning C Hofstötter, M Gil, K Eng, G Indiveri, M Mintz, J Kramer, P Verschure Advances in neural information processing systems 17, 2004 | 21 | 2004 |
| Semantic integration and enrichment of heterogeneous biological databases AC Sima, K Stockinger, TM de Farias, M Gil Evolutionary Genomics: Statistical and Computational Methods, 655-690, 2019 | 20 | 2019 |
| Fast estimation of the difference between two PAM/JTT evolutionary distances in triplets of homologous sequences C Dessimoz, M Gil, A Schneider, GH Gonnet BMC bioinformatics 7, 1-11, 2006 | 12 | 2006 |
| ARPIP: ancestral sequence reconstruction with insertions and deletions under the Poisson Indel process G Jowkar, J Pečerska, M Maiolo, M Gil, M Anisimova Systematic biology 72 (2), 307-318, 2023 | 7 | 2023 |
| ProPIP: a tool for progressive multiple sequence alignment with Poisson Indel Process M Maiolo, L Gatti, D Frei, T Leidi, M Gil, M Anisimova BMC bioinformatics 22, 1-12, 2021 | 7 | 2021 |
| Computational literature-based discovery for natural products research: current state and future prospects A Lardos, A Aghaebrahimian, A Koroleva, J Sidorova, E Wolfram, ... Frontiers in Bioinformatics 2, 827207, 2022 | 6 | 2022 |
| Accelerating phylogeny-aware alignment with indel evolution using short time Fourier transform M Maiolo, S Ulzega, M Gil, M Anisimova NAR Genomics and Bioinformatics 2 (4), lqaa092, 2020 | 6 | 2020 |
Maria AnisimovaHead of Applied Computational Genomics, ZHAWVerified email at zhaw.ch