Articles with public access mandates - Rie Shimizu-InatsugiLearn more
Available somewhere: 39
Multiple wheat genomes reveal global variation in modern breeding
S Walkowiak, L Gao, C Monat, G Haberer, MT Kassa, J Brinton, ...
Nature 588 (7837), 277-283, 2020
Mandates: US National Science Foundation, Swiss National Science Foundation …
Evolution of self-compatibility in Arabidopsis by a mutation in the male specificity gene
T Tsuchimatsu, K Suwabe, R Shimizu-Inatsugi, S Isokawa, P Pavlidis, ...
Nature 464 (7293), 1342-1346, 2010
Mandates: Swiss National Science Foundation
Gene duplication and genetic exchange drive the evolution of S-RNase-based self-incompatibility in Petunia
K Kubo, T Paape, M Hatakeyama, T Entani, A Takara, K Kajihara, ...
Nature Plants 1 (1), 1-9, 2015
Mandates: Swiss National Science Foundation
The allopolyploid Arabidopsis kamchatica originated from multiple individuals of Arabidopsis lyrata and Arabidopsis halleri
RIE Shimizu‐Inatsugi, J Lihova, H Iwanaga, H Kudoh, K Marhold, ...
Molecular Ecology 18 (19), 4024-4048, 2009
Mandates: Swiss National Science Foundation
Genome assembly and annotation of Arabidopsis halleri, a model for heavy metal hyperaccumulation and evolutionary ecology
RV Briskine, T Paape, R Shimizu‐Inatsugi, T Nishiyama, S Akama, J Sese, ...
Molecular ecology resources 17 (5), 1025-1036, 2017
Mandates: Swiss National Science Foundation, Human Frontier Science Program
Genome-wide quantification of homeolog expression ratio revealed nonstochastic gene regulation in synthetic allopolyploid Arabidopsis
S Akama, R Shimizu-Inatsugi, KK Shimizu, J Sese
Nucleic acids research 42 (6), e46-e46, 2014
Mandates: Swiss National Science Foundation, Human Frontier Science Program
Multiple hybrid de novo genome assembly of finger millet, an orphan allotetraploid crop
M Hatakeyama, S Aluri, MT Balachadran, SR Sivarajan, A Patrignani, ...
DNA Research 25 (1), 39-47, 2018
Mandates: Swiss National Science Foundation
The Cardamine hirsuta genome offers insight into the evolution of morphological diversity
X Gan, A Hay, M Kwantes, G Haberer, A Hallab, RD Ioio, H Hofhuis, ...
Nature plants 2 (11), 1-7, 2016
Mandates: Swiss National Science Foundation, German Research Foundation, UK …
Plant adaptive radiation mediated by polyploid plasticity in transcriptomes
R Shimizu‐Inatsugi, A Terada, K Hirose, H Kudoh, J Sese, KK Shimizu
Molecular Ecology 26 (1), 193-207, 2017
Mandates: Swiss National Science Foundation, Human Frontier Science Program
The More the Merrier: Recent Hybridization and Polyploidy in Cardamine
T Mandáková, A Kovařík, J Zozomová-Lihová, R Shimizu-Inatsugi, ...
The Plant Cell 25 (9), 3280-3295, 2013
Mandates: Swiss National Science Foundation
Ultralong oxford nanopore reads enable the development of a reference-grade perennial ryegrass genome assembly
D Frei, E Veekman, D Grogg, I Stoffel-Studer, A Morishima, ...
Genome biology and evolution 13 (8), evab159, 2021
Mandates: Swiss National Science Foundation
Patterns of polymorphism and selection in the subgenomes of the allopolyploid Arabidopsis kamchatica
T Paape, RV Briskine, G Halstead-Nussloch, HEL Lischer, ...
Nature communications 9 (1), 3909, 2018
Mandates: Swiss National Science Foundation, Human Frontier Science Program
Haplotype-resolved genomes of geminivirus-resistant and geminivirus-susceptible African cassava cultivars
JE Kuon, W Qi, P Schläpfer, M Hirsch-Hoffmann, PR von Bieberstein, ...
BMC biology 17, 1-15, 2019
Mandates: Swiss National Science Foundation, Bill & Melinda Gates Foundation
Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes
Y Takeuchi, S Chaffron, MM Salcher, R Shimizu-Inatsugi, MJ Kobayashi, ...
Systematic and applied microbiology 38 (5), 330-339, 2015
Mandates: Swiss National Science Foundation
Plant trichomes and a single gene GLABRA1 contribute to insect community composition on field-grown Arabidopsis thaliana
Y Sato, R Shimizu-Inatsugi, M Yamazaki, KK Shimizu, AJ Nagano
BMC Plant Biology 19, 1-12, 2019
Mandates: Swiss National Science Foundation
Conserved but Attenuated Parental Gene Expression in Allopolyploids: Constitutive Zinc Hyperaccumulation in the Allotetraploid Arabidopsis kamchatica
T Paape, M Hatakeyama, R Shimizu-Inatsugi, T Cereghetti, Y Onda, ...
Molecular biology and evolution 33 (11), 2781-2800, 2016
Mandates: Swiss National Science Foundation, Human Frontier Science Program
De Novo Genome Assembly of the Japanese Wheat Cultivar Norin 61 Highlights Functional Variation in Flowering Time and Fusarium-Resistant Genes in East …
KK Shimizu, D Copetti, M Okada, T Wicker, T Tameshige, M Hatakeyama, ...
Plant and Cell Physiology 62 (1), 8-27, 2021
Mandates: Swiss National Science Foundation, Genome Canada, European Commission
Female sterility associated with increased clonal propagation suggests a unique combination of androdioecy and asexual reproduction in populations of Cardamine amara (Brassicaceae)
A Tedder, M Helling, JR Pannell, R Shimizu-Inatsugi, T Kawagoe, ...
Annals of Botany 115 (5), 763-776, 2015
Mandates: Swiss National Science Foundation, Human Frontier Science Program
The population genomic signature of environmental association and gene flow in an ecologically divergent tree species Metrosideros polymorpha (Myrtaceae)
A Izuno, K Kitayama, Y Onoda, Y Tsujii, M Hatakeyama, AJ Nagano, ...
Molecular ecology 26 (6), 1515-1532, 2017
Mandates: Swiss National Science Foundation
Fine‐scale empirical data on niche divergence and homeolog expression patterns in an allopolyploid and its diploid progenitor species
R Akiyama, J Sun, M Hatakeyama, HEL Lischer, RV Briskine, A Hay, ...
New Phytologist 229 (6), 3587-3601, 2021
Mandates: Swiss National Science Foundation, Human Frontier Science Program
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