| VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses J Guo, B Bolduc, AA Zayed, A Varsani, G Dominguez-Huerta, TO Delmont, ... Microbiome 9, 1-13, 2021 | 815 | 2021 |
| Marine DNA viral macro-and microdiversity from pole to pole AC Gregory, AA Zayed, N Conceição-Neto, B Temperton, B Bolduc, ... Cell 177 (5), 1109-1123. e14, 2019 | 727 | 2019 |
| DRAM for distilling microbial metabolism to automate the curation of microbiome function M Shaffer, MA Borton, BB McGivern, AA Zayed, SL La Rosa, LM Solden, ... Nucleic Acids Research 48 (16), 8883-8900, 2020 | 679 | 2020 |
| The gut virome database reveals age-dependent patterns of virome diversity in the human gut AC Gregory, O Zablocki, AA Zayed, A Howell, B Bolduc, MB Sullivan Cell host & microbe 28 (5), 724-740. e8, 2020 | 548 | 2020 |
| Genome-centric view of carbon processing in thawing permafrost BJ Woodcroft, CM Singleton, JA Boyd, PN Evans, JB Emerson, ... Nature 560 (7716), 49-54, 2018 | 400 | 2018 |
| Global trends in marine plankton diversity across kingdoms of life FM Ibarbalz, N Henry, MC Brandão, S Martini, G Busseni, H Byrne, ... Cell 179 (5), 1084-1097. e21, 2019 | 385 | 2019 |
| Gene Expression Changes and Community Turnover Differentially Shape the Global Ocean Metatranscriptome G Salazar, L Paoli, A Alberti, J Huerta-Cepas, HJ Ruscheweyh, M Cuenca, ... Cell 179 (5), 1068-1083. e21, 2019 | 346 | 2019 |
| Biosynthetic potential of the global ocean microbiome L Paoli, HJ Ruscheweyh, CC Forneris, F Hubrich, S Kautsar, A Bhushan, ... Nature 607 (7917), 111-118, 2022 | 254 | 2022 |
| Phage-specific metabolic reprogramming of virocells C Howard-Varona, MM Lindback, GE Bastien, N Solonenko, AA Zayed, ... The ISME journal 14 (4), 881-895, 2020 | 189 | 2020 |
| Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome AA Zayed, JM Wainaina, G Dominguez-Huerta, E Pelletier, J Guo, ... Science 376 (6589), 156-162, 2022 | 186 | 2022 |
| Expanding standards in viromics: in silico evaluation of dsDNA viral genome identification, classification, and auxiliary metabolic gene curation AA Pratama, B Bolduc, AA Zayed, ZP Zhong, J Guo, DR Vik, MC Gazitúa, ... PeerJ 9, e11447, 2021 | 85 | 2021 |
| Environmental vulnerability of the global ocean epipelagic plankton community interactome S Chaffron, E Delage, M Budinich, D Vintache, N Henry, C Nef, M Ardyna, ... Science Advances 7 (35), eabg1921, 2021 | 77* | 2021 |
| Novel integrative elements and genomic plasticity in ocean ecosystems T Hackl, R Laurenceau, MJ Ankenbrand, C Bliem, Z Cariani, E Thomas, ... Cell 186 (1), 47-62. e16, 2023 | 69 | 2023 |
| Diversity and ecological footprint of Global Ocean RNA viruses G Dominguez-Huerta, AA Zayed, JM Wainaina, J Guo, F Tian, ... Science 376 (6598), 1202-1208, 2022 | 68 | 2022 |
| Interaction dynamics and virus–host range for estuarine actinophages captured by epicPCR EG Sakowski, K Arora-Williams, F Tian, AA Zayed, O Zablocki, ... Nature Microbiology 6 (5), 630-642, 2021 | 47 | 2021 |
| Spinal cord injury changes the structure and functional potential of gut bacterial and viral communities J Du, AA Zayed, KA Kigerl, K Zane, MB Sullivan, PG Popovich Msystems 6 (3), 10.1128/msystems. 01356-20, 2021 | 35 | 2021 |
| ‘Supermutators’ found amongst highly levofloxacin-resistant E. coli isolates: a rapid protocol for the detection of mutation sites AAF Zayed, TM Essam, AGM Hashem, OM El-Tayeb Emerging Microbes & Infections 4 (1), e4, 2015 | 32 | 2015 |
| efam: an expanded, metaproteome-supported HMM profile database of viral protein families AA Zayed, D Lücking, M Mohssen, D Cronin, B Bolduc, AC Gregory, ... Bioinformatics 37 (22), 4202-4208, 2021 | 26 | 2021 |
| Discovery and ecogenomic context of a global Caldiserica-related phylum active in thawing permafrost, Candidatus Cryosericota phylum nov., Ca. Cryosericia class nov., Ca … MA Martinez, BJ Woodcroft, JCI Espinoza, AA Zayed, CM Singleton, ... Systematic and applied microbiology 42 (1), 54-66, 2019 | 24 | 2019 |
| Genome‐resolved viral ecology in a marine oxygen minimum zone D Vik, MC Gazitúa, CL Sun, AA Zayed, M Aldunate, MR Mulholland, ... Environmental Microbiology 23 (6), 2858-2874, 2021 | 19 | 2021 |
Matthew B SullivanDistinguished Professor, Ohio State University / Founding Director, Center of Microbiome ScienceVerified email at osu.edu