| Large-scale data integration framework provides a comprehensive view on glioblastoma multiforme K Ovaska, M Laakso, S Haapa-Paananen, R Louhimo, P Chen, ... Genome medicine 2, 1-12, 2010 | 236 | 2010 |
| CNAmet: an R package for integrating copy number, methylation and expression data R Louhimo, S Hautaniemi Bioinformatics 27 (6), 887-888, 2011 | 145 | 2011 |
| Individual and combined effects of DNA methylation and copy number alterations on miRNA expression in breast tumors MR Aure, SK Leivonen, T Fleischer, Q Zhu, J Overgaard, J Alsner, ... Genome biology 14, 1-20, 2013 | 114 | 2013 |
| MMP16 mediates a proteolytic switch to promote cell–cell adhesion, collagen alignment, and lymphatic invasion in melanoma O Tatti, E Gucciardo, P Pekkonen, T Holopainen, R Louhimo, P Repo, ... Cancer research 75 (10), 2083-2094, 2015 | 80 | 2015 |
| Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data A Alkodsi, R Louhimo, S Hautaniemi Briefings in bioinformatics 16 (2), 242-254, 2015 | 71 | 2015 |
| Drug-sensitivity screening and genomic characterization of 45 HPV-negative head and neck carcinoma cell lines for novel biomarkers of drug efficacy T Lepikhova, PR Karhemo, R Louhimo, B Yadav, A Murumägi, ... Molecular cancer therapeutics 17 (9), 2060-2071, 2018 | 52 | 2018 |
| Identification of several potential chromatin binding sites of HOXB7 and its downstream target genes in breast cancer H Heinonen, T Lepikhova, B Sahu, H Pehkonen, P Pihlajamaa, ... International Journal of Cancer 137 (10), 2374-2383, 2015 | 47 | 2015 |
| Comparative analysis of algorithms for integration of copy number and expression data R Louhimo, T Lepikhova, O Monni, S Hautaniemi Nature methods 9 (4), 351-355, 2012 | 47 | 2012 |
| Anduril 2: upgraded large-scale data integration framework A Cervera, V Rantanen, K Ovaska, M Laakso, J Nunez-Fontarnau, ... Bioinformatics 35 (19), 3815-3817, 2019 | 38 | 2019 |
| Distinct subtypes of diffuse large B-cell lymphoma defined by hypermutated genes A Alkodsi, A Cervera, K Zhang, R Louhimo, L Meriranta, A Pasanen, ... Leukemia 33 (11), 2662-2672, 2019 | 34 | 2019 |
| Deltex-1 mutations predict poor survival in diffuse large B-cell lymphoma L Meriranta, A Pasanen, R Louhimo, A Cervera, A Alkodsi, M Autio, ... Haematologica 102 (5), e195, 2017 | 27 | 2017 |
| DNA methylation signature (SAM40) identifies subgroups of the Luminal A breast cancer samples with distinct survival T Fleischer, J Klajic, MR Aure, R Louhimo, AV Pladsen, L Ottestad, ... Oncotarget 8 (1), 1074, 2016 | 25 | 2016 |
| Deregulation of COMMD1 is associated with poor prognosis in diffuse large B-cell lymphoma M Taskinen, R Louhimo, S Koivula, P Chen, V Rantanen, H Holte, ... PLoS One 9 (3), e91031, 2014 | 25 | 2014 |
| Data integration to prioritize drugs using genomics and curated data R Louhimo, M Laakso, D Belitskin, J Klefström, R Lehtonen, S Hautaniemi BioData mining 9, 1-13, 2016 | 22 | 2016 |
| Let-7 microRNA controls invasion-promoting lysosomal changes via the oncogenic transcription factor myeloid zinc finger-1 SA Tvingsholm, MB Hansen, KKB Clemmensen, DM Brix, B Rafn, ... Oncogenesis 7 (2), 14, 2018 | 20 | 2018 |
| Kognitiivisen ergonomian parantaminen hoitotyössä: Satakunnan sairaanhoitopiirin kehittämishanke V Kalakoski, S Käpykangas, T Valtonen, S Selinheimo, T Koivisto, ... Työterveyslaitos, 2018 | 14 | 2018 |
| Kognitiivisen ergonomian parantaminen hoitotyössä V Kalakoski, S Käpykangas, T Valtonen, S Selinheimo, T Koivisto, ... Satakunnan keskussairaalan kehittämishanke. Hankeraportti. Työterveyslaitos, 2-6, 2018 | 13 | 2018 |
| Identification of sample-specific regulations using integrative network level analysis C Liu, R Louhimo, M Laakso, R Lehtonen, S Hautaniemi BMC cancer 15, 1-11, 2015 | 11 | 2015 |
| Identification of genetic markers with synergistic survival effect in cancer R Louhimo, M Laakso, T Heikkinen, S Laitinen, P Manninen, V Rogojin, ... BMC systems biology 7, 1-9, 2013 | 6 | 2013 |
| Language-Agnostic Reproducible Data Analysis Using Literate Programming B Vassilev, R Louhimo, E Ikonen, S Hautaniemi Plos one 11 (10), e0164023, 2016 | 4 | 2016 |