| In situ structural analysis of the human nuclear pore complex A Von Appen, J Kosinski, L Sparks, A Ori, AL DiGuilio, B Vollmer, ... Nature 526 (7571), 140-143, 2015 | 433 | 2015 |
| Deciphering a global network of functionally associated post‐translational modifications P Minguez, L Parca, F Diella, DR Mende, R Kumar, M Helmer‐Citterich, ... Molecular systems biology 8 (1), 599, 2012 | 282 | 2012 |
| PTMcode: a database of known and predicted functional associations between post-translational modifications in proteins P Minguez, I Letunic, L Parca, P Bork Nucleic acids research 41 (D1), D306-D311, 2012 | 159 | 2012 |
| PTMcode v2: a resource for functional associations of post-translational modifications within and between proteins P Minguez, I Letunic, L Parca, L Garcia-Alonso, J Dopazo, ... Nucleic acids research 43 (D1), D494-D502, 2015 | 118 | 2015 |
| Spatiotemporal variation of mammalian protein complex stoichiometries A Ori, M Iskar, K Buczak, P Kastritis, L Parca, A Andrés-Pons, S Singer, ... Genome biology 17, 1-15, 2016 | 105 | 2016 |
| Spatial tissue proteomics quantifies inter-and intratumor heterogeneity in hepatocellular carcinoma (HCC) K Buczak, A Ori, JM Kirkpatrick, K Holzer, D Dauch, S Roessler, V Endris, ... Molecular & Cellular Proteomics 17 (4), 810-825, 2018 | 85 | 2018 |
| PDBe-KB: a community-driven resource for structural and functional annotations M Varadi, J Berrisford, M Deshpande, SS Nair, A Gutmanas, D Armstrong, ... Nucleic Acids Research 48 (D1), D344-D353, 2020 | 84 | 2020 |
| Modeling cancer drug response through drug-specific informative genes L Parca, G Pepe, M Pietrosanto, G Galvan, L Galli, A Palmeri, ... Scientific reports 9 (1), 15222, 2019 | 66 | 2019 |
| Systematic identification of phosphorylation-mediated protein interaction switches MJ Betts, O Wichmann, M Utz, T Andre, E Petsalaki, P Minguez, L Parca, ... PLoS computational biology 13 (3), e1005462, 2017 | 55 | 2017 |
| MicroRNAs and long non-coding RNAs as potential candidates to target specific motifs of SARS-CoV-2 L Natarelli, L Parca, T Mazza, C Weber, F Virgili, D Fratantonio Non-coding RNA 7 (1), 14, 2021 | 41 | 2021 |
| Histone Deacetylase Inhibitors (HDACi) Cause the Selective Depletion of Bromodomain Containing Proteins (BCPs)*[S] MT Mackmull, M Iskar, L Parca, S Singer, P Bork, A Ori, M Beck Molecular & Cellular Proteomics 14 (5), 1350-1360, 2015 | 38 | 2015 |
| MitImpact 3: modeling the residue interaction network of the Respiratory Chain subunits S Castellana, T Biagini, F Petrizzelli, L Parca, N Panzironi, V Caputo, ... Nucleic acids research 49 (D1), D1282-D1288, 2021 | 33 | 2021 |
| Discovering sequence and structure landscapes in RNA interaction motifs M Adinolfi, M Pietrosanto, L Parca, G Ausiello, F Ferrè, M Helmer-Citterich Nucleic acids research 47 (10), 4958-4969, 2019 | 23 | 2019 |
| Phosphate binding sites identification in protein structures L Parca, PF Gherardini, M Helmer-Citterich, G Ausiello Nucleic acids research 39 (4), 1231-1242, 2011 | 23 | 2011 |
| Kinome-wide identification of phosphorylation networks in eukaryotic proteomes L Parca, B Ariano, A Cabibbo, M Paoletti, A Tamburrini, A Palmeri, ... Bioinformatics 35 (3), 372-379, 2019 | 17 | 2019 |
| APOGEE 2: multi-layer machine-learning model for the interpretable prediction of mitochondrial missense variants SD Bianco, L Parca, F Petrizzelli, T Biagini, A Giovannetti, N Liorni, ... Nature Communications 14 (1), 5058, 2023 | 16 | 2023 |
| Mapping protein carboxymethylation sites provides insights into their role in proteostasis and cell proliferation S Di Sanzo, K Spengler, A Leheis, JM Kirkpatrick, TL Rändler, ... Nature Communications 12 (1), 6743, 2021 | 16* | 2021 |
| Phosfinder: a web server for the identification of phosphate-binding sites on protein structures L Parca, I Mangone, PF Gherardini, G Ausiello, M Helmer-Citterich Nucleic acids research 39 (suppl_2), W278-W282, 2011 | 16 | 2011 |
| Pyntacle: a parallel computing-enabled framework for large-scale network biology analysis L Parca, M Truglio, T Biagini, S Castellana, F Petrizzelli, D Capocefalo, ... GigaScience 9 (10), giaa115, 2020 | 14 | 2020 |
| Phosphorylation within Intrinsic Disordered Region Discriminates Histone Variant macroH2A1 Splicing Isoforms—macroH2A1. 1 and macroH2A1. 2 S Giallongo, O Lo Re, G Lochmanová, L Parca, F Petrizzelli, Z Zdráhal, ... Biology 10 (7), 659, 2021 | 13 | 2021 |
Manuela Helmer CitterichProfessor of Molecular Biology and Bioinformatics, University of Rome Tor VergataVerified email at uniroma2.it