Michael B. Stadler

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Dirk SchübelerDirector, Friedrich Miescher Institute for Biomedical Research, Basel, SwitzerlandVerified email at fmi.ch
Lukas BurgerResearch Associate, Friedrich Miescher Institute for Biomedical ResearchVerified email at fmi.ch
Antoine Hendrik Felix Marie PetersFriedrich Miescher Institute for Biomedical ResearchVerified email at fmi.ch
Christian BeiselHead Genomics Facility Basel, ETH ZurichVerified email at bsse.ethz.ch
Erik van NimwegenProfessor of computational systems biology, Biozentrum, University of BaselVerified email at unibas.ch
rabih murrAssistant Professor, University of GenevaVerified email at unige.ch
Vijay TiwariQueen’s University, UKVerified email at qub.ac.uk
Constance L CepkoProfessor of Genetics and Opthalmology, Harvard Medical School, Investigator of HHMIVerified email at genetics.med.harvard.edu
Michael Rebhan, Ph.D.NIBR Basel, Novartis (R&D)Verified email at novartis.com
Robert IvanekHead of Bioinformatics at the Department of Biomedicine, University of BaselVerified email at unibas.ch
Ilya LukoninHCS specialist, Friedrich Miescher Institute for Biomedical ResearchVerified email at fmi.ch
Jeff TrimarchiLehigh UniversityVerified email at lehigh.edu
Prisca LiberaliFriedrich Miescher Institute for Biomedical Research (FMI), ETH D-BSSEVerified email at fmi.ch
Volker BusskampUniversity of Bonn - Dep. of OphthalmologyVerified email at uni-bonn.de
Panagiotis PapasaikasFriedrich Miescher Institute (FMI)Verified email at fmi.ch
Anita LerchUniversity of Notre DameVerified email at nd.edu
Daniela TavernaDept. Mol. Biotech. and Health SciencesVerified email at unito.it
Jeremy L. JenkinsUS Head Discovery Sciences, Novartis BioMedical ResearchVerified email at novartis.com
Fabio MohnStaff scientist, FMI Basel, SwitzerlandVerified email at fmi.ch
Eric S FischerProfessor of Biological Chemistry and Molecular Pharmacology, Harvard Medical SchoolVerified email at crystal.harvard.edu

Michael B. Stadler

Head of Computational Biology, Friedrich Miescher Institute for Biomedical Research, Switzerland

Verified email at fmi.ch - Homepage

Genomics Epigenetics DNA methylation Single cell analysis


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Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome M Weber, I Hellmann, MB Stadler, L Ramos, S Pääbo, M Rebhan, ... Nature genetics 39 (4), 457-466, 2007	2663	2007
DNA-binding factors shape the mouse methylome at distal regulatory regions MB Stadler, R Murr, L Burger, R Ivanek, F Lienert, A Schöler, E Nimwegen, ... Nature 480 (7378), 490-495, 2011	1534	2011
Encoding of conditioned fear in central amygdala inhibitory circuits S Ciocchi, C Herry, F Grenier, SBE Wolff, JJ Letzkus, I Vlachos, I Ehrlich, ... Nature 468 (7321), 277-282, 2010	1128	2010
Lineage-specific polycomb targets and de novo DNA methylation define restriction and potential of neuronal progenitors F Mohn, M Weber, M Rebhan, TC Roloff, J Richter, MB Stadler, M Bibel, ... Molecular cell 30 (6), 755-766, 2008	1118	2008
Structure of the DDB1–CRBN E3 ubiquitin ligase in complex with thalidomide ES Fischer, K Böhm, JR Lydeard, H Yang, MB Stadler, S Cavadini, ... Nature 512 (7512), 49-53, 2014	1079	2014
An immune atlas of clear cell renal cell carcinoma S Chevrier, JH Levine, VRT Zanotelli, K Silina, D Schulz, M Bacac, ... Cell 169 (4), 736-749. e18, 2017	966	2017
Repressive and active histone methylation mark distinct promoters in human and mouse spermatozoa U Brykczynska, M Hisano, S Erkek, L Ramos, EJ Oakeley, TC Roloff, ... Nature structural & molecular biology 17 (6), 679-687, 2010	764	2010
Characterizing light-regulated retinal microRNAs reveals rapid turnover as a common property of neuronal microRNAs J Krol, V Busskamp, I Markiewicz, MB Stadler, S Ribi, J Richter, J Duebel, ... Cell 141 (4), 618-631, 2010	592	2010
Self-organization and symmetry breaking in intestinal organoid development D Serra, U Mayr, A Boni, I Lukonin, M Rempfler, L Challet Meylan, ... Nature 569 (7754), 66-72, 2019	509	2019
Cell types of the human retina and its organoids at single-cell resolution CS Cowan, M Renner, M De Gennaro, B Gross-Scherf, D Goldblum, ... Cell 182 (6), 1623-1640. e34, 2020	503	2020
The transcriptome of retinal Müller glial cells K Roesch, AP Jadhav, JM Trimarchi, MB Stadler, B Roska, BB Sun, ... Journal of Comparative Neurology 509 (2), 225-238, 2008	452	2008
Polycomb group proteins Ezh2 and Rnf2 direct genomic contraction and imprinted repression in early mouse embryos R Terranova, S Yokobayashi, MB Stadler, AP Otte, M van Lohuizen, ... Developmental cell 15 (5), 668-679, 2008	379	2008
Molecular determinants of nucleosome retention at CpG-rich sequences in mouse spermatozoa S Erkek, M Hisano, CY Liang, M Gill, R Murr, J Dieker, D Schübeler, ... Nature structural & molecular biology 20 (7), 868-875, 2013	377	2013
PIK3CA^H1047R induces multipotency and multi-lineage mammary tumours S Koren, L Reavie, JP Couto, D De Silva, MB Stadler, T Roloff, A Britschgi, ... Nature 525 (7567), 114-118, 2015	339	2015
QuasR: quantification and annotation of short reads in R D Gaidatzis, A Lerch, F Hahne, MB Stadler Bioinformatics 31 (7), 1130-1132, 2015	320	2015
Analysis of intronic and exonic reads in RNA-seq data characterizes transcriptional and post-transcriptional regulation D Gaidatzis, L Burger, M Florescu, MB Stadler Nature biotechnology 33 (7), 722-729, 2015	318	2015
Tyrosine phosphatase SHP2 promotes breast cancer progression and maintains tumor-initiating cells via activation of key transcription factors and a positive feedback signaling loop N Aceto, N Sausgruber, H Brinkhaus, D Gaidatzis, G Martiny-Baron, ... Nature medicine 18 (4), 529-537, 2012	313	2012
microRNA‐214 contributes to melanoma tumour progression through suppression of TFAP2C E Penna, F Orso, D Cimino, E Tenaglia, A Lembo, E Quaglino, L Poliseno, ... The EMBO journal 30 (10), 1990-2007, 2011	313	2011
Transcriptional code and disease map for adult retinal cell types S Siegert, E Cabuy, BG Scherf, H Kohler, S Panda, YZ Le, HJ Fehling, ... Nature neuroscience 15 (3), 487-495, 2012	289	2012
Allergenicity prediction by protein sequence MB Stadler, BM Stadler The FASEB Journal 17 (9), 1141-1143, 2003	270	2003

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