A soybean cyst nematode resistance gene points to a new mechanism of plant resistance to pathogens S Liu, PK Kandoth, SD Warren, G Yeckel, R Heinz, J Alden, C Yang, ... Nature 492 (7428), 256-260, 2012 | 453 | 2012 |
A structural perspective on protein–protein interactions RB Russell, F Alber, P Aloy, FP Davis, D Korkin, M Pichaud, M Topf, A Sali Current opinion in structural biology 14 (3), 313-324, 2004 | 352 | 2004 |
Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature methods 16 (9), 843-852, 2019 | 312 | 2019 |
Structural genomics of SARS-CoV-2 indicates evolutionary conserved functional regions of viral proteins S Srinivasan, H Cui, Z Gao, M Liu, S Lu, W Mkandawire, O Narykov, ... Viruses 12 (4), 360, 2020 | 305 | 2020 |
Integrating diverse data for structure determination of macromolecular assemblies F Alber, F Förster, D Korkin, M Topf, A Sali Annu. Rev. Biochem. 77 (1), 443-477, 2008 | 261 | 2008 |
Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism R Corominas, X Yang, GN Lin, S Kang, Y Shen, L Ghamsari, M Broly, ... Nature communications 5 (1), 3650, 2014 | 170 | 2014 |
Dual roles for the variable domain in protein trafficking and host‐specific recognition of Heterodera glycines CLE effector proteins J Wang, C Lee, A Replogle, S Joshi, D Korkin, R Hussey, TJ Baum, ... New Phytologist 187 (4), 1003-1017, 2010 | 142 | 2010 |
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013 | 115 | 2013 |
Determining effects of non-synonymous SNPs on protein-protein interactions using supervised and semi-supervised learning N Zhao, JG Han, CR Shyu, D Korkin PLoS computational biology 10 (5), e1003592, 2014 | 107 | 2014 |
A fast multiple longest common subsequence (MLCS) algorithm Q Wang, D Korkin, Y Shang IEEE Transactions on Knowledge and Data Engineering 23 (3), 321-334, 2010 | 91 | 2010 |
The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes R Masonbrink, TR Maier, U Muppirala, AS Seetharam, E Lord, PS Juvale, ... BMC genomics 20, 1-14, 2019 | 90 | 2019 |
Biological classification with RNA-seq data: Can alternatively spliced transcript expression enhance machine learning classifiers? NT Johnson, A Dhroso, KJ Hughes, D Korkin Rna 24 (9), 1119-1132, 2018 | 57 | 2018 |
Long identical multispecies elements in plant and animal genomes J Reneker, E Lyons, GC Conant, JC Pires, M Freeling, CR Shyu, D Korkin Proceedings of the National Academy of Sciences 109 (19), E1183-E1191, 2012 | 57 | 2012 |
Evidence of positive selection in mitochondrial complexes I and V of the African elephant TM Finch, N Zhao, D Korkin, KH Frederick, LS Eggert PLoS One 9 (4), e92587, 2014 | 56 | 2014 |
Localization of protein‐binding sites within families of proteins D Korkin, FP Davis, A Sali Protein Science 14 (9), 2350-2360, 2005 | 56 | 2005 |
Structural modeling of protein interactions by analogy: application to PSD-95 D Korkin, FP Davis, F Alber, T Luong, MY Shen, V Lucic, MB Kennedy, ... PLoS computational biology 2 (11), e153, 2006 | 55 | 2006 |
Tel2 mediates activation and localization of ATM/Tel1 kinase to a double-strand break CM Anderson, D Korkin, DL Smith, S Makovets, JJ Seidel, A Sali, ... Genes & development 22 (7), 854-859, 2008 | 52 | 2008 |
Systematic mutagenesis of serine hydroxymethyltransferase reveals an essential role in nematode resistance PK Kandoth, S Liu, E Prenger, A Ludwig, N Lakhssassi, R Heinz, Z Zhou, ... Plant physiology 175 (3), 1370-1380, 2017 | 49 | 2017 |
Molecular architecture and dynamics of SARS-CoV-2 envelope by integrative modeling W Pezeshkian, F Grünewald, O Narykov, S Lu, V Arkhipova, ... Structure 31 (4), 492-503. e7, 2023 | 48 | 2023 |
Novel global effector mining from the transcriptome of early life stages of the soybean cyst nematode Heterodera glycines M Gardner, A Dhroso, N Johnson, EL Davis, TJ Baum, D Korkin, ... Scientific reports 8 (1), 2505, 2018 | 45 | 2018 |