Articles with public access mandates - Felix SchlesingerLearn more
Available somewhere: 14
STAR: ultrafast universal RNA-seq aligner
A Dobin, CA Davis, F Schlesinger, J Drenkow, C Zaleski, S Jha, P Batut, ...
Bioinformatics 29 (1), 15-21, 2013
Mandates: US National Institutes of Health
An integrated encyclopedia of DNA elements in the human genome
ENCODE Project Consortium
Nature, 2012
Mandates: US National Institutes of Health
Landscape of transcription in human cells
S Djebali, CA Davis, A Merkel, A Dobin, T Lassmann, A Mortazavi, ...
Nature 489 (7414), 101-108, 2012
Mandates: Swiss National Science Foundation, US National Institutes of Health …
A user’s guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS Biol 9 (4), e1001046, 2011
Mandates: US National Institutes of Health
Synthetic spike-in standards for RNA-seq experiments
L Jiang, F Schlesinger, CA Davis, Y Zhang, R Li, M Salit, TR Gingeras, ...
Genome research 21 (9), 1543-1551, 2011
Mandates: US National Institutes of Health
A user's guide to the encyclopedia of DNA elements (ENCODE)
RM Myers, J Stamatoyannopoulos, M Snyder, I Dunham, RC Hardison, ...
PLoS biology 9 (4), 2011
Mandates: US National Institutes of Health
The reality of pervasive transcription
MB Clark, PP Amaral, FJ Schlesinger, ME Dinger, RJ Taft, JL Rinn, ...
PLoS biology 9 (7), e1000625, 2011
Mandates: US National Institutes of Health
Comparative analysis of the transcriptome across distant species
MB Gerstein, J Rozowsky, KK Yan, D Wang, C Cheng, JB Brown, ...
Nature 512 (7515), 445-448, 2014
Mandates: US National Institutes of Health, Howard Hughes Medical Institute, Wellcome …
Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster
X Deng, JB Hiatt, DK Nguyen, S Ercan, D Sturgill, LDW Hillier, ...
Nature genetics 43 (12), 1179-1185, 2011
Mandates: US National Institutes of Health
ExpansionHunter: a sequence-graph-based tool to analyze variation in short tandem repeat regions
E Dolzhenko, V Deshpande, F Schlesinger, P Krusche, R Petrovski, ...
Bioinformatics 35 (22), 4754-4756, 2019
Mandates: UK Medical Research Council
Paragraph: a graph-based structural variant genotyper for short-read sequence data
S Chen, P Krusche, E Dolzhenko, RM Sherman, R Petrovski, ...
Genome biology 20, 1-13, 2019
Mandates: US National Science Foundation, US National Institutes of Health
De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements
F Schlesinger, AD Smith, TR Gingeras, GJ Hannon, E Hodges
Genome research 23 (10), 1601-1614, 2013
Mandates: US National Institutes of Health
Detection of novel fusion transcript VTI1A-CFAP46 in hepatocellular carcinoma
S Tsuge, B Saberi, Y Cheng, Z Wang, A Kim, H Luu, JM Abraham, ...
Gastrointestinal Tumors 6 (1-2), 11-27, 2019
Mandates: US National Institutes of Health
The Reality of Pervasive
MB Clark, PP Amaral, FJ Schlesinger, ME Dinger, RJ Taft
Mandates: US National Institutes of Health
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