| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 468* | 2020 |
| Metabolic network modeling of microbial communities MB Biggs, GL Medlock, GL Kolling, JA Papin Wiley Interdisciplinary Reviews: Systems Biology and Medicine 7 (5), 317-334, 2015 | 127 | 2015 |
| Inferring metabolic mechanisms of interaction within a defined gut microbiota GL Medlock, MA Carey, DG McDuffie, MB Mundy, N Giallourou, ... Cell systems 7 (3), 245-257. e7, 2018 | 117* | 2018 |
| Protein-and zinc-deficient diets modulate the murine microbiome and metabolic phenotype J Mayneris-Perxachs, DT Bolick, J Leng, GL Medlock, GL Kolling, ... The American journal of clinical nutrition 104 (5), 1253-1262, 2016 | 105 | 2016 |
| Cross-modulation of pathogen-specific pathways enhances malnutrition during enteric co-infection with Giardia lamblia and enteroaggregative Escherichia coli LA Bartelt, DT Bolick, J Mayneris-Perxachs, GL Kolling, GL Medlock, ... PLoS pathogens 13 (7), e1006471, 2017 | 88 | 2017 |
| Systems-level metabolism of the altered Schaedler flora, a complete gut microbiota MB Biggs, GL Medlock, TJ Moutinho, HJ Lees, JR Swann, GL Kolling, ... The ISME journal 11 (2), 426-438, 2017 | 84 | 2017 |
| A novel mouse model of Campylobacter jejuni enteropathy and diarrhea N Giallourou, GL Medlock, DT Bolick, PHQS Medeiros, SE Ledwaba, ... PLoS pathogens 14 (3), e1007083, 2018 | 62 | 2018 |
| Guiding the Refinement of Biochemical Knowledgebases with Ensembles of Metabolic Networks and Machine Learning GL Medlock, JA Papin Cell Systems, 2020 | 60 | 2020 |
| Histone deacetylase inhibition by gut microbe-generated short-chain fatty acids entrains intestinal epithelial circadian rhythms JA Fawad, DH Luzader, GF Hanson, TJ Moutinho Jr, CA McKinney, ... Gastroenterology 163 (5), 1377-1390. e11, 2022 | 57 | 2022 |
| Mucosal genomics implicate lymphocyte activation and lipid metabolism in refractory environmental enteric dysfunction Y Haberman, NT Iqbal, S Ghandikota, I Mallawaarachchi, T Braun, ... Gastroenterology 160 (6), 2055-2071. e0, 2021 | 57 | 2021 |
| Megasphaera in the Stool Microbiota Is Negatively Associated With Diarrheal Cryptosporidiosis MA Carey, GL Medlock, M Alam, M Kabir, MJ Uddin, U Nayak, J Papin, ... Clinical Infectious Diseases 73 (6), e1242-e1251, 2021 | 47 | 2021 |
| Novel co-culture plate enables growth dynamic-based assessment of contact-independent microbial interactions TJ Moutinho Jr, JC Panagides, MB Biggs, GL Medlock, GL Kolling, ... PLoS One 12 (8), e0182163, 2017 | 40 | 2017 |
| Phosphorylation of Ser283 enhances the stiffness of the tropomyosin head-to-tail overlap domain W Lehman, G Medlock, XE Li, W Suphamungmee, AY Tu, A Schmidtmann, ... Archives of biochemistry and biophysics 571, 10-15, 2015 | 40 | 2015 |
| Enhancing microbiome research through genome-scale metabolic modeling NYD Ankrah, DB Bernstein, M Biggs, M Carey, M Engevik, ... MSystems 6 (6), e00599-21, 2021 | 27 | 2021 |
| Medusa: software to build and analyze ensembles of genome-scale metabolic network reconstructions GL Medlock, TJ Moutinho, JA Papin PLoS computational biology 16 (4), e1007847, 2020 | 23 | 2020 |
| Increased Urinary Trimethylamine N-Oxide Following Cryptosporidium Infection and Protein Malnutrition Independent of Microbiome Effects DT Bolick, J Mayneris-Perxachs, GL Medlock, GL Kolling, JA Papin, ... The Journal of Infectious Diseases 216 (1), 64-71, 2017 | 18 | 2017 |
| Comparative analyses of parasites with a comprehensive database of genome-scale metabolic models MA Carey, GL Medlock, M Stolarczyk, WA Petri Jr, JL Guler, JA Papin PLoS computational biology 18 (2), e1009870, 2022 | 12 | 2022 |
| Influential parameters for the analysis of intracellular parasite metabolomics MA Carey, V Covelli, A Brown, GL Medlock, M Haaren, JG Cooper, ... Msphere 3 (2), 10.1128/msphere. 00097-18, 2018 | 10* | 2018 |
| A computational model of Pseudomonas syringae metabolism unveils a role for branched-chain amino acids in Arabidopsis leaf colonization PJ Tubergen, G Medlock, A Moore, X Zhang, JA Papin, CH Danna PLOS Computational Biology 19 (12), e1011651, 2023 | 4* | 2023 |
| 2521. VE707, a Defined Live Biotherapeutic Product for Prevention of Infection by Multidrug-Resistant Gram-Negative Bacteria G Medlock, C Felix, W Alsharif, L Cornacchione, M Schinn, A Watson, ... Open Forum Infectious Diseases 10 (Suppl 2), 2023 | 1 | 2023 |
Jason PapinHarrison Distinguished Teaching Professor of Biomedical Engineering, University of VirginiaVerified email at virginia.edu