Yasuo Tabei

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Yoshihiro YamanishiNagoya UniversityVerified email at i.nagoya-u.ac.jp
Koji TsudaProfessor, GSFS, The University of TokyoVerified email at k.u-tokyo.ac.jp
Masaaki KoteraPreferred Networks Inc., | Tokyo Medical and Dental University | University of TokyoVerified email at preferred.jp
Hiroshi SakamotoKyushu Institute of TechnologyVerified email at ai.kyutech.ac.jp
Kiyoshi AsaiProfessor of Computational Biology, University of TokyoVerified email at k.u-tokyo.ac.jp
Simon J. PuglisiProfessor, Department of Computer Science, University of HelsinkiVerified email at cs.helsinki.fi
Kentaro TomiiAISTVerified email at aist.go.jp
Susumu GotoDatabase Center for Life Science, Research Organization of Information and SystemsVerified email at dbcls.rois.ac.jp
djamal belazzouguiCERISTVerified email at cerist.dz
Hiroto SaigoKyushu UniversityVerified email at inf.kyushu-u.ac.jp
Juha KärkkäinenDepartment of Computer scienceVerified email at cs.helsinki.fi
Travis GagieAssociate Professor at Dalhousie UniversityVerified email at dal.ca
Alberto Ordóñez PereiraPinterestVerified email at pinterest.com
Paweł GawrychowskiUniversity of WrocławVerified email at cs.uni.wroc.pl
Kazuhiro TakemotoKyushu Institute of TechnologyVerified email at bio.kyutech.ac.jp
Edouard PauwelsToulouse School of EconomicsVerified email at tse-fr.eu
Ichiro TakeuchiProfessor, Nagoya UniversityVerified email at f.mail.nagoya-u.ac.jp
Naoya TakeishiUTokyoVerified email at g.ecc.u-tokyo.ac.jp
Yoshinobu KawaharaOsaka University / RIKENVerified email at ist.osaka-u.ac.jp
Takehisa YAIRIThe University of Tokyo, Research Center for Advanced Science and TechnologyVerified email at g.ecc.u-tokyo.ac.jp

Yasuo Tabei

Team Leader at RIKEN-AIP

Verified email at riken.go.jp - Homepage

Data Mining Machine learning Data structure


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
A fast structural multiple alignment method for long RNA sequences Y Tabei, H Kiryu, T Kin, K Asai BMC bioinformatics 9, 1-17, 2008	135	2008
Identification of chemogenomic features from drug–target interaction networks using interpretable classifiers Y Tabei, E Pauwels, V Stoven, K Takemoto, Y Yamanishi Bioinformatics 28 (18), i487-i494, 2012	111	2012
Murlet: a practical multiple alignment tool for structural RNA sequences H Kiryu, Y Tabei, T Kin, K Asai Bioinformatics 23 (13), 1588-1598, 2007	100	2007
SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments Y Tabei, K Tsuda, T Kin, K Asai Bioinformatics 22 (14), 1723-1729, 2006	78	2006
Bayesian dynamic mode decomposition. N Takeishi, Y Kawahara, Y Tabei, T Yairi IJCAI, 2814-2821, 2017	76	2017
PoSSuM: a database of similar protein–ligand binding and putative pockets JI Ito, Y Tabei, K Shimizu, K Tsuda, K Tomii Nucleic acids research 40 (D1), D541-D548, 2012	69	2012
Predicting inhibitory and activatory drug targets by chemically and genetically perturbed transcriptome signatures R Sawada, M Iwata, Y Tabei, H Yamato, Y Yamanishi Scientific reports 8 (1), 156, 2018	61	2018
Scalable prediction of compound-protein interactions using minwise hashing Y Tabei, Y Yamanishi BMC systems biology 7 (Suppl 6), S3, 2013	57	2013
Queries on LZ-bounded encodings D Belazzougui, T Gagie, P Gawrychowski, J Kärkkäinen, A Ordónez, ... 2015 Data Compression Conference, 83-92, 2015	55	2015
Fully-online grammar compression S Maruyama, Y Tabei, H Sakamoto, K Sadakane International Symposium on String Processing and Information Retrieval, 218-229, 2013	48	2013
Access, rank, and select in grammar-compressed strings D Belazzougui, PH Cording, SJ Puglisi, Y Tabei Algorithms-ESA 2015: 23rd Annual European Symposium, Patras, Greece …, 2015	47	2015
Improved ESP-index: a practical self-index for highly repetitive texts Y Takabatake, Y Tabei, H Sakamoto International Symposium on Experimental Algorithms, 2014	45	2014
Optimal-Time Queries on BWT-runs Compressed Indexes T Nishimoto, Y Tabei 48th International Colloquium on Automata, Languages, and Programming, 2021	44	2021
Supervised de novo reconstruction of metabolic pathways from metabolome-scale compound sets M Kotera, Y Tabei, Y Yamanishi, T Tokimatsu, S Goto Bioinformatics 29 (13), i135-i144, 2013	44	2013
KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics M Kotera, Y Tabei, Y Yamanishi, Y Moriya, T Tokimatsu, M Kanehisa, ... BMC systems biology 7, 1-17, 2013	42	2013
Predicting drug-induced transcriptome responses of a wide range of human cell lines by a novel tensor-train decomposition algorithm M Iwata, L Yuan, Q Zhao, Y Tabei, F Berenger, R Sawada, S Akiyoshi, ... Bioinformatics 35 (14), i191-i199, 2019	39	2019
PDB‐scale analysis of known and putative ligand‐binding sites with structural sketches JI Ito, Y Tabei, K Shimizu, K Tomii, K Tsuda Proteins: Structure, Function, and Bioinformatics 80 (3), 747-763, 2012	36	2012
Inferring protein domains associated with drug side effects based on drug-target interaction network H Iwata, S Mizutani, Y Tabei, M Kotera, S Goto, Y Yamanishi BMC systems biology 7, 1-11, 2013	34	2013
Scalable partial least squares regression on grammar-compressed data matrices Y Tabei, H Saigo, Y Yamanishi, S J. Puglisi Proceedings of the 22nd ACM SIGKDD International Conference on Knowledge …, 2016	31	2016
Scalable Partial Least Squares Regression on Grammar-Compressed Data Matrices Y Tabei, H Saigo, Y Yamanishi, SJ Puglisi	31	2016

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