| Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research F Hufsky, K Lamkiewicz, A Almeida, A Aouacheria, C Arighi, A Bateman, ... Briefings in bioinformatics 22 (2), 642-663, 2021 | 156 | 2021 |
| SARS-CoV-2 Causes Severe Epithelial Inflammation and Barrier Dysfunction S Deinhardt-Emmer, S Böttcher, C Häring, L Giebeler, A Henke, R Zell, ... Journal of Virology 95 (10), e00110-21, 2021 | 96 | 2021 |
| In silico serine β-lactamases analysis reveals a huge potential resistome in environmental and pathogenic species C Brandt, SD Braun, C Stein, P Slickers, R Ehricht, MW Pletz, ... Scientific reports 7 (1), 43232, 2017 | 74 | 2017 |
| ESBL colonization and acquisition in a hospital population: The molecular epidemiology and transmission of resistance genes S Hagel, O Makarewicz, A Hartung, D Weiß, C Stein, C Brandt, ... PloS one 14 (1), e0208505, 2019 | 63 | 2019 |
| The bigger picture: the history of antibiotics and antimicrobial resistance displayed by scientometric data C Brandt, O Makarewicz, T Fischer, C Stein, Y Pfeifer, G Werner, MW Pletz International journal of antimicrobial agents 44 (5), 424-430, 2014 | 61 | 2014 |
| A Nosocomial Foodborne Outbreak of a VIM Carbapenemase-Expressing Citrobacter freundii MW Pletz, A Wollny, UH Dobermann, J Rödel, S Neubauer, C Stein, ... Clinical Infectious Diseases 67 (1), 58-64, 2018 | 56 | 2018 |
| Evaluation of microbiome enrichment and host DNA depletion in human vaginal samples using Oxford Nanopore’s adaptive sequencing M Marquet, J Zöllkau, J Pastuschek, A Viehweger, E Schleußner, ... Scientific reports 12 (1), 4000, 2022 | 52 | 2022 |
| Severe clinical relapse in an immunocompromised host with persistent SARS-CoV-2 infection PA Reuken, A Stallmach, MW Pletz, C Brandt, N Andreas, S Hahnfeld, ... Leukemia 35 (3), 920-923, 2021 | 48 | 2021 |
| poreCov-An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore Sequencing C Brandt, S Krautwurst, R Spott, M Lohde, M Jundzill, M Marquet, ... Frontiers in Genetics 12, 711437, 2021 | 39 | 2021 |
| Assessing genetic diversity and similarity of 435 KPC-carrying plasmids C Brandt, A Viehweger, A Singh, MW Pletz, D Wibberg, J Kalinowski, ... Scientific reports 9 (1), 11223, 2019 | 39 | 2019 |
| Core genome multilocus sequence typing scheme for improved characterization and epidemiological surveillance of pathogenic Brucella MY Abdel-Glil, P Thomas, C Brandt, F Melzer, A Subbaiyan, P Chaudhuri, ... Journal of clinical microbiology 60 (8), e00311-22, 2022 | 35 | 2022 |
| Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN) R Van Damme, M Hölzer, A Viehweger, B Müller, E Bongcam-Rudloff, ... PLoS computational biology 17 (2), e1008716, 2021 | 31 | 2021 |
| Whole genome sequencing of 39 invasive Streptococcus pneumoniae sequence type 199 isolates revealed switches from serotype 19A to 15B O Makarewicz, M Lucas, C Brandt, L Herrmann, A Albersmeier, C Rückert, ... PLoS One 12 (1), e0169370, 2017 | 31 | 2017 |
| Use of MALDI-TOF mass spectrometry to detect nosocomial outbreaks of Serratia marcescens and Citrobacter freundii J Rödel, A Mellmann, C Stein, M Alexi, F Kipp, B Edel, K Dawczynski, ... European Journal of Clinical Microbiology & Infectious Diseases 38, 581-591, 2019 | 29 | 2019 |
| What the Phage: a scalable workflow for the identification and analysis of phage sequences M Marquet, M Hölzer, MW Pletz, A Viehweger, O Makarewicz, R Ehricht, ... Gigascience 11, giac110, 2022 | 27 | 2022 |
| Abundance tracking by long-read nanopore sequencing of complex microbial communities in samples from 20 different biogas/wastewater plants C Brandt, E Bongcam-Rudloff, B Müller Applied Sciences 10 (21), 7518, 2020 | 27 | 2020 |
| Spatio-Temporal Distribution of Acinetobacter baumannii in Germany—A Comprehensive Systematic Review of Studies on Resistance Development in Humans … G Wareth, C Brandt, LD Sprague, H Neubauer, MW Pletz Microorganisms 8 (3), 375, 2020 | 25 | 2020 |
| WGS based analysis of acquired antimicrobial resistance in human and non-human Acinetobacter baumannii isolates from a German perspective G Wareth, C Brandt, LD Sprague, H Neubauer, MW Pletz BMC microbiology 21, 1-13, 2021 | 21 | 2021 |
| Phage genome diversity in a biogas-producing microbiome analyzed by Illumina and Nanopore GridION sequencing K Willenbücher, D Wibberg, L Huang, M Conrady, P Ramm, J Gätcke, ... Microorganisms 10 (2), 368, 2022 | 18 | 2022 |
| Chromosome-level genome assembly and transcriptome-based annotation of the oleaginous yeast Rhodotorula toruloides CBS 14 GC Martín-Hernández, B Müller, M Chmielarz, C Brandt, M Hölzer, ... Genomics 113 (6), 4022-4027, 2021 | 16 | 2021 |
Mathias PletzJena University HospitalVerified email at med.uni-jena.de