Articles with public access mandates - Feiran Li 李斐然Learn more
Available somewhere: 24
A consensus S. cerevisiae metabolic model Yeast8 and its ecosystem for comprehensively probing cellular metabolism
H Lu, F Li, BJ Sánchez, Z Zhu, G Li, I Domenzain, S Marcišauskas, ...
Nature communications 10 (1), 3586, 2019
Mandates: Knut and Alice Wallenberg Foundation, European Commission
Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction
F Li, L Yuan, H Lu, G Li, Y Chen, MKM Engqvist, EJ Kerkhoven, J Nielsen
Nature Catalysis 5 (8), 662-672, 2022
Mandates: Knut and Alice Wallenberg Foundation, Swedish Research Council, European …
Systematic design and in vitro validation of novel one-carbon assimilation pathways
X Yang, Q Yuan, H Luo, F Li, Y Mao, X Zhao, J Du, P Li, X Ju, Y Zheng, ...
Metabolic Engineering 56, 142-153, 2019
Mandates: Chinese Academy of Sciences, National Natural Science Foundation of China
SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework
BJ Sánchez, F Li, EJ Kerkhoven, J Nielsen
BMC systems biology 13, 1-9, 2019
Mandates: Knut and Alice Wallenberg Foundation, European Commission
Genome-scale modeling of yeast metabolism: retrospectives and perspectives
Y Chen, F Li, J Nielsen
FEMS Yeast Research 22 (1), foac003, 2022
Mandates: Knut and Alice Wallenberg Foundation, European Commission
Pathway-Consensus Approach to Metabolic Network Reconstruction for Pseudomonas putida KT2440 by Systematic Comparison of Published Models
Q Yuan, T Huang, P Li, T Hao, F Li, H Ma, Z Wang, X Zhao, T Chen, ...
PloS one 12 (1), e0169437, 2017
Mandates: Chinese Academy of Sciences, National Natural Science Foundation of China
Improving recombinant protein production by yeast through genome-scale modeling using proteome constraints
F Li, Y Chen, Q Qi, Y Wang, L Yuan, M Huang, IE Elsemman, A Feizi, ...
Nature communications 13 (1), 2969, 2022
Mandates: Knut and Alice Wallenberg Foundation, Swedish Research Council, European …
GotEnzymes: an extensive database of enzyme parameter predictions
F Li, Y Chen, M Anton, J Nielsen
Nucleic Acids Research 51 (D1), D583-D586, 2023
Mandates: Knut and Alice Wallenberg Foundation, Swedish Research Council, European …
Yeast optimizes metal utilization based on metabolic network and enzyme kinetics
Y Chen, F Li, J Mao, Y Chen, J Nielsen
Proceedings of the National Academy of Sciences 118 (12), e2020154118, 2021
Mandates: European Commission
Reconstruction, simulation and analysis of enzyme-constrained metabolic models using GECKO Toolbox 3.0
Y Chen, J Gustafsson, A Tafur Rangel, M Anton, I Domenzain, ...
Nature Protocols 19 (3), 629-667, 2024
Mandates: Swedish Research Council for Environment, Agricultural Sciences and Spatial …
Yeast metabolic innovations emerged via expanded metabolic network and gene positive selection
H Lu, F Li, L Yuan, I Domenzain, R Yu, H Wang, G Li, Y Chen, B Ji, ...
Molecular Systems Biology 17 (10), e10427, 2021
Mandates: Knut and Alice Wallenberg Foundation, European Commission
Evaluating accessibility, usability and interoperability of genome-scale metabolic models for diverse yeasts species
I Domenzain, F Li, EJ Kerkhoven, V Siewers
FEMS Yeast Research 21 (1), foab002, 2021
Mandates: European Commission
An enzymatic assay for high-throughput screening of cytidine-producing microbial strains
H Dong, Y Liu, X Zu, N Li, F Li, D Zhang
PloS one 10 (3), e0121612, 2015
Mandates: National Natural Science Foundation of China
Genome-scale metabolic model analysis indicates low energy production efficiency in marine ammonia-oxidizing archaea
F Li, W Xie, Q Yuan, H Luo, P Li, T Chen, X Zhao, Z Wang, H Ma
AMB Express 8, 1-12, 2018
Mandates: Chinese Academy of Sciences, National Natural Science Foundation of China
HGTphyloDetect: facilitating the identification and phylogenetic analysis of horizontal gene transfer
L Yuan, H Lu, F Li, J Nielsen, EJ Kerkhoven
Briefings in Bioinformatics 24 (2), bbad035, 2023
Mandates: National Natural Science Foundation of China, Knut and Alice Wallenberg …
Identification of a new gene yecC involved in threonine export in Escherichia coli
Y Xu, Y Liu, F Li, G Cao, P Zheng, J Sun, J Wen, D Zhang
FEMS Microbiology Letters 364 (17), fnx174, 2017
Mandates: National Natural Science Foundation of China
Yeast9: A consensus yeast metabolic model enables quantitative analysis of cellular metabolism by incorporating big data
C Zhang, BJ Sánchez, F Li, CWQ Eiden, WT Scott, UW Liebal, LM Blank, ...
bioRxiv, 2023.12. 03.569754, 2023
Mandates: National Natural Science Foundation of China, German Research Foundation …
Genome scale modeling of the protein secretory pathway reveals novel targets for improved recombinant protein production in yeast
F Li, Y Chen, Q Qi, Y Wang, L Yuan, M Huang, IE Elsemman, A Feizi, ...
BioRxiv, 2021.10. 16.464630, 2021
Mandates: Knut and Alice Wallenberg Foundation, Swedish Research Council, European …
Yeast9: a consensus genome-scale metabolic model for S. cerevisiae curated by the community
C Zhang, BJ Sánchez, F Li, CWQ Eiden, WT Scott, UW Liebal, LM Blank, ...
Molecular Systems Biology 20 (10), 1134-1150, 2024
Mandates: Netherlands Organisation for Scientific Research, Knut and Alice Wallenberg …
Filling gaps in metabolism using hypothetical reactions
F Li
Proceedings of the National Academy of Sciences 119 (49), e2217400119, 2022
Mandates: European Commission
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