Articles with public access mandates - Fernando CruzLearn more
Not available anywhere: 1
Reconciliation of Regulatory Data: The Regulatory Networks of Escherichia coli and Bacillus subtilis
D Lima, F Cruz, M Rocha, O Dias
Practical Applications of Computational Biology & Bioinformatics, 14th …, 2021
Mandates: Fundação para a Ciência e a Tecnologia, Portugal, European Commission
Available somewhere: 9
MEWpy: a computational strain optimization workbench in Python
V Pereira, F Cruz, M Rocha
Bioinformatics 37 (16), 2494-2496, 2021
Mandates: European Commission
A LysM Domain Intervenes in Sequential Protein-Protein and Protein-Peptidoglycan Interactions Important for Spore Coat Assembly in Bacillus subtilis
FC Pereira, F Nunes, F Cruz, C Fernandes, AL Isidro, D Lousa, ...
Journal of Bacteriology 201 (4), 10.1128/jb. 00642-18, 2019
Mandates: US National Institutes of Health, Fundação para a Ciência e a Tecnologia …
merlin, an improved framework for the reconstruction of high-quality genome-scale metabolic models
J Capela, D Lagoa, R Rodrigues, E Cunha, F Cruz, A Barbosa, J Bastos, ...
Nucleic Acids Research 50 (11), 6052-6066, 2022
Mandates: US Department of Energy, Fundação para a Ciência e a Tecnologia, Portugal
A review of methods for the reconstruction and analysis of integrated genome-scale models of metabolism and regulation
F Cruz, JP Faria, M Rocha, I Rocha, O Dias
Biochemical Society Transactions 48 (5), 1889-1903, 2020
Mandates: US Department of Energy, Fundação para a Ciência e a Tecnologia, Portugal
merlin v4.0: an updated platform for the reconstruction of high-quality genome-scale metabolic models
J Capela, D Lagoa, R Rodrigues, E Cunha, F Cruz, A Barbosa, J Bastos, ...
bioRxiv, 2021.02. 24.432752, 2021
Mandates: Fundação para a Ciência e a Tecnologia, Portugal
BioISO: an objective-oriented application for assisting the curation of genome-scale metabolic models
F Cruz, J Capela, EC Ferreira, M Rocha, O Dias
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2024
Mandates: Fundação para a Ciência e a Tecnologia, Portugal
SamPler – a novel method for selecting parameters for gene functional annotation routines
F Cruz, D Lagoa, J Mendes, I Rocha, EC Ferreira, M Rocha, O Dias
BMC bioinformatics 20, 1-11, 2019
Mandates: Fundação para a Ciência e a Tecnologia, Portugal, European Commission
Systematic assessment of template-based genome-scale metabolic models created with the BiGG Integration Tool
A Oliveira, E Cunha, F Cruz, J Capela, JC Sequeira, M Sampaio, ...
Journal of Integrative Bioinformatics 19 (3), 20220014, 2022
Mandates: Fundação para a Ciência e a Tecnologia, Portugal
Towards the Reconstruction of Integrated Genome-Scale Models of Metabolism and Gene Expression
F Cruz, D Lima, JP Faria, M Rocha, O Dias
Practical Applications of Computational Biology and Bioinformatics, 13th …, 2020
Mandates: US Department of Energy, Fundação para a Ciência e a Tecnologia, Portugal
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