| Transcriptional control of human p53-regulated genes T Riley, E Sontag, P Chen, A Levine Nature reviews Molecular cell biology 9 (5), 402-412, 2008 | 2428 | 2008 |
| Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins M Slattery, T Riley, P Liu, N Abe, P Gomez-Alcala, I Dror, T Zhou, R Rohs, ... Cell 147 (6), 1270-1282, 2011 | 570 | 2011 |
| Evaluation of methods for modeling transcription factor sequence specificity MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ... Nature biotechnology 31 (2), 126-134, 2013 | 423 | 2013 |
| Probing DNA shape and methylation state on a genomic scale with DNase I A Lazarovici, T Zhou, A Shafer, AC Dantas Machado, TR Riley, ... Proceedings of the National Academy of Sciences 110 (16), 6376-6381, 2013 | 210 | 2013 |
| The regulation of the endosomal compartment by p53 the tumor suppressor gene X Yu, T Riley, AJ Levine The FEBS journal 276 (8), 2201-2212, 2009 | 157 | 2009 |
| TLS/FUS (translocated in liposarcoma/fused in sarcoma) regulates target gene transcription via single-stranded DNA response elements AY Tan, TR Riley, T Coady, HJ Bussemaker, JL Manley Proceedings of the National Academy of Sciences 109 (16), 6030-6035, 2012 | 149 | 2012 |
| SELEX-seq: a method for characterizing the complete repertoire of binding site preferences for transcription factor complexes TR Riley, M Slattery, N Abe, C Rastogi, D Liu, RS Mann, HJ Bussemaker Hox Genes: Methods and Protocols, 255-278, 2014 | 115 | 2014 |
| Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCE TR Riley, A Lazarovici, RS Mann, HJ Bussemaker Elife 4, e06397, 2015 | 42 | 2015 |
| The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes T Riley, X Yu, E Sontag, A Levine BMC bioinformatics 10, 1-13, 2009 | 18 | 2009 |
| CXCL12/CXCR4-mediated procollagen secretion is coupled to cullin-RING ubiquitin ligase activation S Patalano, J Rodríguez-Nieves, C Colaneri, J Cotellessa, D Almanza, ... Scientific reports 8 (1), 3499, 2018 | 15 | 2018 |
| Nonalcoholic fatty liver disease demonstrates a pre-fibrotic and premalignant molecular signature D Almanza, M Gharaee-Kermani, A Zhilin-Roth, JA Rodriguez-Nieves, ... Digestive diseases and sciences 64, 1257-1269, 2019 | 13 | 2019 |
| ModEx: A text mining system for extracting mode of regulation of transcription factor-gene regulatory interaction S Farahmand, T Riley, K Zarringhalam Journal of Biomedical Informatics 102, 103353, 2020 | 12 | 2020 |
| The influence of tine parameters on stubble handling ability. M Slattery, T Riley | 5 | 1997 |
| The influence of tine parameters on stubble handling ability. MG Slattery, TW Riley | 5 | 1996 |
| CXCL12-CXCR4 AXIS ACTIVATION PROMOTES COP II VESICLE-MEDIATED SECRETION OF COLLAGEN BY PROSTATE MYOFIBROBLASTS: MP17-09 S Patalano-Salsman, JA Rodriguez-Nieves, D Almanza, A Avery, ... Journal of Urology 197 (4), e214-e215, 2017 | | 2017 |
Eduardo SontagNortheastern University ECE and BioEVerified email at northeastern.edu