| Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019 | 1180 | 2019 |
| SteadyCom: predicting microbial abundances while ensuring community stability SHJ Chan, MN Simons, CD Maranas PLoS computational biology 13 (5), e1005539, 2017 | 212 | 2017 |
| Standardizing biomass reactions and ensuring complete mass balance in genome-scale metabolic models SHJ Chan, J Cai, L Wang, MN Simons-Senftle, CD Maranas Bioinformatics 33 (22), 3603-3609, 2017 | 116 | 2017 |
| Bacterial colonization reprograms the neonatal gut metabolome K Bittinger, C Zhao, Y Li, E Ford, ES Friedman, J Ni, CV Kulkarni, J Cai, ... Nature microbiology 5 (6), 838-847, 2020 | 105 | 2020 |
| Farnesoid X Receptor Signaling Shapes the Gut Microbiota and Controls Hepatic Lipid Metabolism L Zhang, C Xie, RG Nichols, SHJ Chan, C Jiang, R Hao, PB Smith, J Cai, ... mSystems 1 (5), e00070-16, 2016 | 104 | 2016 |
| Combining metabolic engineering and biocompatible chemistry for high-yield production of homo-diacetyl and homo-(S, S)-2, 3-butanediol J Liu, SHJ Chan, T Brock-Nannestad, J Chen, SY Lee, C Solem, ... Metabolic engineering 36, 57-67, 2016 | 68 | 2016 |
| A comprehensive genome-scale model for Rhodosporidium toruloides IFO0880 accounting for functional genomics and phenotypic data HV Dinh, PF Suthers, SHJ Chan, Y Shen, T Xiao, A Deewan, SS Jagtap, ... Metabolic Engineering Communications 9, e00101, 2019 | 66 | 2019 |
| Systems biology–A guide for understanding and developing improved strains of lactic acid bacteria J Liu, SHJ Chan, J Chen, C Solem, PR Jensen Frontiers in microbiology 10, 876, 2019 | 61 | 2019 |
| Thermodynamic analysis of the pathway for ethanol production from cellobiose in Clostridium thermocellum. S Dash, DG Olson, SHJ Chan, D Amador-Noguez, LR Lynd, CD Maranas Metabolic engineering, 2019 | 55 | 2019 |
| 1-D constitutive model for evolution of stress-induced R-phase and localized Lüders-like stress-induced martensitic transformation of super-elastic NiTi wires CW Chan, SHJ Chan, HC Man, P Ji International Journal of Plasticity 32, 85-105, 2012 | 42 | 2012 |
| Decomposing flux distributions into elementary flux modes in genome-scale metabolic networks SHJ Chan, P Ji Bioinformatics 27 (16), 2256-2262, 2011 | 40 | 2011 |
| Genome-scale metabolic reconstruction of the non-model yeast Issatchenkia orientalis SD108 and its application to organic acids production PF Suthers, HV Dinh, Z Fatma, Y Shen, SHJ Chan, JD Rabinowitz, ... Metabolic Engineering Communications 11, e00148, 2020 | 30 | 2020 |
| Predicting Nash equilibria for microbial metabolic interactions J Cai, T Tan, SHJ Chan Bioinformatics 36 (24), 5649-5655, 2020 | 27 | 2020 |
| Metabolic analyses of nitrogen fixation in the soybean microsymbiont Sinorhizobium fredii using constraint-based modeling CA Contador, SK Lo, SHJ Chan, HM Lam MSystems 5 (1), 10.1128/msystems. 00516-19, 2020 | 27 | 2020 |
| Accelerating flux balance calculations in genome-scale metabolic models by localizing the application of loopless constraints SHJ Chan, L Wang, S Dash, CD Maranas Bioinformatics 34 (24), 4248-4255, 2018 | 27 | 2018 |
| Re-wiring of energy metabolism promotes viability during hyperreplication stress in E. coli G Charbon, C Campion, SHJ Chan, L Bjørn, A Weimann, LCN da Silva, ... PLoS genetics 13 (1), e1006590, 2017 | 24 | 2017 |
| Predicting the Longitudinally and Radially Varying Gut Microbiota Composition Using Multi-Scale Microbial Metabolic Modeling SHJ Chan, ES Friedman, GD Wu, CD Maranas Processes 7 (7), 394, 2019 | 23 | 2019 |
| A conserved interdomain microbial network underpins cadaver decomposition despite environmental variables ZM Burcham, AD Belk, BB McGivern, A Bouslimani, P Ghadermazi, ... Nature Microbiology 9 (3), 595-613, 2024 | 22 | 2024 |
| Elucidation of the regulatory role of the fructose operon reveals a novel target for enhancing the NADPH supply in Corynebacterium glutamicum Z Wang, SHJ Chan, S Sudarsan, LM Blank, PR Jensen, C Solem Metabolic engineering 38, 344-357, 2016 | 20 | 2016 |
| Can microbes compete with cows for sustainable protein production-A feasibility study on high quality protein M Vestergaard, SHJ Chan, PR Jensen Scientific Reports 6 (1), 36421, 2016 | 17 | 2016 |
Costas D. MaranasDonald B. Broughton Professor of Chemical Engineering, Penn State UniversityVerified email at psu.edu