| De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits Y Li, G Zhou, J Ma, W Jiang, L Jin, Z Zhang, Y Guo, J Zhang, Y Sui, ... Nature biotechnology 32 (10), 1045-1052, 2014 | 698 | 2014 |
| Transcriptional landscape and clinical utility of enhancer RNAs for eRNA-targeted therapy in cancer Z Zhang, JH Lee, H Ruan, Y Ye, J Krakowiak, Q Hu, Y Xiang, J Gong, ... Nature communications 10 (1), 4562, 2019 | 214 | 2019 |
| Whole-genome sequencing of the snub-nosed monkey provides insights into folivory and evolutionary history X Zhou, B Wang, Q Pan, J Zhang, S Kumar, X Sun, Z Liu, H Pan, Y Lin, ... Nature genetics 46 (12), 1303-1310, 2014 | 198 | 2014 |
| Characterization of hypoxia-associated molecular features to aid hypoxia-targeted therapy Y Ye, Q Hu, H Chen, K Liang, Y Yuan, Y Xiang, H Ruan, Z Zhang, A Song, ... Nature metabolism 1 (4), 431-444, 2019 | 192 | 2019 |
| Comprehensive characterization of circular RNAs in~ 1000 human cancer cell lines H Ruan, Y Xiang, J Ko, S Li, Y Jing, X Zhu, Y Ye, Z Zhang, T Mills, J Feng, ... Genome medicine 11, 1-14, 2019 | 143 | 2019 |
| Global analysis of tRNA and translation factor expression reveals a dynamic landscape of translational regulation in human cancers Z Zhang, Y Ye, J Gong, H Ruan, CJ Liu, Y Xiang, C Cai, AY Guo, J Ling, ... Communications Biology 1 (1), 234, 2018 | 81 | 2018 |
| Pancan-meQTL: a database to systematically evaluate the effects of genetic variants on methylation in human cancer J Gong, H Wan, S Mei, H Ruan, Z Zhang, C Liu, AY Guo, L Diao, X Miao, ... Nucleic acids research 47 (D1), D1066-D1072, 2019 | 56 | 2019 |
| Characterization of the dual functional effects of heat shock proteins (HSPs) in cancer hallmarks to aid development of HSP inhibitors Z Zhang, J Jing, Y Ye, Z Chen, Y Jing, S Li, W Hong, H Ruan, Y Liu, Q Hu, ... Genome medicine 12, 1-16, 2020 | 53 | 2020 |
| APAatlas: decoding alternative polyadenylation across human tissues W Hong, H Ruan, Z Zhang, Y Ye, Y Liu, S Li, Y Jing, H Zhang, L Diao, ... Nucleic acids research 48 (D1), D34-D39, 2020 | 53 | 2020 |
| Single-cell reconstruction of differentiation trajectory reveals a critical role of ETS1 in human cardiac lineage commitment H Ruan, Y Liao, Z Ren, L Mao, F Yao, P Yu, Y Ye, Z Zhang, S Li, H Xu, ... BMC biology 17, 1-16, 2019 | 42 | 2019 |
| Depression compromises antiviral innate immunity via the AVP-AHI1-Tyk2 axis HG Zhang, B Wang, Y Yang, X Liu, J Wang, N Xin, S Li, Y Miao, Q Wu, ... Cell Research 32 (10), 897-913, 2022 | 36 | 2022 |
| HeRA: an atlas of enhancer RNAs across human tissues Z Zhang, W Hong, H Ruan, Y Jing, S Li, Y Liu, J Wang, W Li, L Diao, ... Nucleic acids research 49 (D1), D932-D938, 2021 | 36 | 2021 |
| The genetic and pharmacogenomic landscape of snoRNAs in human cancer Y Liu, H Ruan, S Li, Y Ye, W Hong, J Gong, Z Zhang, Y Jing, X Zhang, ... Molecular cancer 19, 1-7, 2020 | 27 | 2020 |
| Targeting matrix metalloproteinase MMP3 greatly enhances oncolytic virus mediated tumor therapy M Liang, J Wang, C Wu, M Wu, J Hu, J Dai, H Ruan, S Xiong, C Dong Translational oncology 14 (12), 101221, 2021 | 25 | 2021 |
| GPEdit: the genetic and pharmacogenomic landscape of A-to-I RNA editing in cancers H Ruan, Q Li, Y Liu, Y Liu, C Lussier, L Diao, L Han Nucleic acids research 50 (D1), D1231-D1237, 2022 | 21 | 2022 |
| tRic: a user-friendly data portal to explore the expression landscape of tRNAs in human cancers Z Zhang, H Ruan, CJ Liu, Y Ye, J Gong, L Diao, AY Guo, L Han RNA biology 17 (11), 1674-1679, 2020 | 20 | 2020 |
| Multi-omics characterization of autophagy-related molecular features for therapeutic targeting of autophagy M Luo, L Ye, R Chang, Y Ye, Z Zhang, C Liu, S Li, Y Jing, H Ruan, ... Nature communications 13 (1), 6345, 2022 | 19 | 2022 |
| Differential responses of leaf water-use efficiency and photosynthetic nitrogen-use efficiency to fertilization in Bt-introduced and conventional rice lines RQ Guo, H Ruan, WJ Yang, B Liu, SC Sun Photosynthetica 49, 507-514, 2011 | 17 | 2011 |
| TreeExp1.0: R Package for Analyzing Expression Evolution Based on RNA‐Seq Data H Ruan, Z Su, X Gu Journal of Experimental Zoology Part B: Molecular and Developmental …, 2016 | 14 | 2016 |
| Characterization of circular RNAs with advanced sequencing technologies in human complex diseases H Ruan, PC Wang, L Han Wiley Interdisciplinary Reviews: RNA, e1759, 2022 | 13 | 2022 |
Leng HanDavid Brown Chair Professor in Genomic Medicine, Indiana University School of MedicineVerified email at iu.edu