| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 17613 | 2019 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 1044 | 2018 |
| US immigration westernizes the human gut microbiome P Vangay, AJ Johnson, TL Ward, GA Al-Ghalith, RR Shields-Cutler, ... Cell 175 (4), 962-972. e10, 2018 | 714 | 2018 |
| Daily sampling reveals personalized diet-microbiome associations in humans AJ Johnson, P Vangay, GA Al-Ghalith, BM Hillmann, TL Ward, ... Cell host & microbe 25 (6), 789-802. e5, 2019 | 599 | 2019 |
| Captivity humanizes the primate microbiome JB Clayton, P Vangay, HU Huang, T Ward, BM Hillmann, GA Al-Ghalith, ... Proceedings of the National Academy of Sciences 113 (37), 10376-10381, 2016 | 513 | 2016 |
| Chemotherapy‐driven dysbiosis in the intestinal microbiome E Montassier, T Gastinne, P Vangay, GA Al‐Ghalith, ... Alimentary pharmacology & therapeutics 42 (5), 515-528, 2015 | 482 | 2015 |
| Complex host genetics influence the microbiome in inflammatory bowel disease D Knights, MS Silverberg, RK Weersma, D Gevers, G Dijkstra, H Huang, ... Genome medicine 6, 1-11, 2014 | 464 | 2014 |
| Evaluating the information content of shallow shotgun metagenomics B Hillmann, GA Al-Ghalith, RR Shields-Cutler, Q Zhu, DM Gohl, ... Msystems 3 (6), 10.1128/msystems. 00069-18, 2018 | 352 | 2018 |
| Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea Q Zhu, U Mai, W Pfeiffer, S Janssen, F Asnicar, JG Sanders, ... Nature communications 10 (1), 5477, 2019 | 316 | 2019 |
| Systematic review: human gut dysbiosis induced by non‐antibiotic prescription medications Q Le Bastard, GA Al‐Ghalith, M Grégoire, G Chapelet, F Javaudin, ... Alimentary pharmacology & therapeutics 47 (3), 332-345, 2018 | 253 | 2018 |
| QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science. PeerJ E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... Inc 6, e27295v2, 2018 | 208 | 2018 |
| Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection E Montassier, GA Al-Ghalith, T Ward, S Corvec, T Gastinne, G Potel, ... Genome medicine 8, 1-11, 2016 | 205 | 2016 |
| Development of the human mycobiome over the first month of life and across body sites TL Ward, MG Dominguez-Bello, T Heisel, G Al-Ghalith, D Knights, ... MSystems 3 (3), 10.1128/msystems. 00140-17, 2018 | 150 | 2018 |
| High-fat diet changes fungal microbiomes and interkingdom relationships in the murine gut T Heisel, E Montassier, A Johnson, G Al-Ghalith, YW Lin, LN Wei, ... MSphere 2 (5), 10.1128/msphere. 00351-17, 2017 | 121 | 2017 |
| Patterns of seasonality and group membership characterize the gut microbiota in a longitudinal study of wild Verreaux's sifakas (Propithecus verreauxi) A Springer, C Fichtel, GA Al‐Ghalith, F Koch, KR Amato, JB Clayton, ... Ecology and evolution 7 (15), 5732-5745, 2017 | 108 | 2017 |
| Antibiotic-induced acceleration of type 1 diabetes alters maturation of innate intestinal immunity XS Zhang, J Li, KA Krautkramer, M Badri, T Battaglia, TC Borbet, H Koh, ... Elife 7, e37816, 2018 | 101 | 2018 |
| An increased abundance of Clostridiaceae characterizes arthritis in inflammatory bowel disease and rheumatoid arthritis: a cross-sectional study DA Muñiz Pedrogo, J Chen, B Hillmann, P Jeraldo, G Al-Ghalith, V Taneja, ... Inflammatory bowel diseases 25 (5), 902-913, 2019 | 99 | 2019 |
| Personalized Microbiome Class Students; et al. Daily sampling reveals personalized diet-microbiome associations in humans AJ Johnson, P Vangay, GA Al-Ghalith, BM Hillmann, TL Ward, ... Cell Host Microbe 25 (6), 789-802, 2019 | 86 | 2019 |
| Associations between nutrition, gut microbiome, and health in a novel nonhuman primate model JB Clayton, GA Al-Ghalith, HT Long, BV Tuan, F Cabana, H Huang, ... Scientific reports 8 (1), 11159, 2018 | 79 | 2018 |
| NINJA-OPS: fast accurate marker gene alignment using concatenated ribosomes GA Al-Ghalith, E Montassier, HN Ward, D Knights PLoS computational biology 12 (1), e1004658, 2016 | 72 | 2016 |
