Articles with public access mandates - Pere PuigbòLearn more
Available somewhere: 31
CAIcal: a combined set of tools to assess codon usage adaptation
P Puigbò, IG Bravo, S Garcia-Vallve
Biology direct 3, 1-8, 2008
Mandates: US National Institutes of Health
Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation‐specific genes
MY Galperin, SL Mekhedov, P Puigbo, S Smirnov, YI Wolf, DJ Rigden
Environmental microbiology 14 (11), 2870-2890, 2012
Mandates: US National Institutes of Health
Phylogenomics of prokaryotic ribosomal proteins
N Yutin, P Puigbò, EV Koonin, YI Wolf
PloS one 7 (5), e36972, 2012
Mandates: US National Institutes of Health
Search for a ‘Tree of Life’in the thicket of the phylogenetic forest
P Puigbò, YI Wolf, EV Koonin
Journal of biology 8, 59, 2009
Mandates: US National Institutes of Health
Genomes in turmoil: quantification of genome dynamics in prokaryote supergenomes
P Puigbò, AE Lobkovsky, DM Kristensen, YI Wolf, EV Koonin
BMC biology 12, 1-19, 2014
Mandates: US National Institutes of Health
Fitness costs limit influenza A virus hemagglutinin glycosylation as an immune evasion strategy
SR Das, SE Hensley, A David, L Schmidt, JS Gibbs, P Puigbò, WL Ince, ...
Proceedings of the National Academy of Sciences 108 (51), E1417-E1422, 2011
Mandates: US National Institutes of Health
The tree and net components of prokaryote evolution
P Puigbo, YI Wolf, EV Koonin
Genome biology and evolution 2, 745-756, 2010
Mandates: US National Institutes of Health
Glycosylation focuses sequence variation in the influenza A virus H1 hemagglutinin globular domain
SR Das, P Puigbò, SE Hensley, DE Hurt, JR Bennink, JW Yewdell
PLOS pathogens 6 (11), e1001211, 2010
Mandates: US National Institutes of Health
Classification of the glyphosate target enzyme (5-enolpyruvylshikimate-3-phosphate synthase) for assessing sensitivity of organisms to the herbicide
L Leino, T Tall, M Helander, I Saloniemi, K Saikkonen, S Ruuskanen, ...
Journal of Hazardous Materials 408, 124556, 2021
Mandates: Academy of Finland
Inevitability of genetic parasites
J Iranzo, P Puigbò, AE Lobkovsky, YI Wolf, EV Koonin
Genome biology and evolution 8 (9), 2856-2869, 2016
Mandates: US National Institutes of Health
Ecosystem consequences of herbicides: the role of microbiome
S Ruuskanen, B Fuchs, R Nissinen, P Puigbò, M Rainio, K Saikkonen, ...
Trends in ecology & evolution 38 (1), 35-43, 2023
Mandates: Academy of Finland
RCDI/eRCDI: a web-server to estimate codon usage deoptimization
P Puigbò, L Aragonès, S Garcia-Vallvé
BMC research notes 3, 1-4, 2010
Mandates: US National Institutes of Health
Genomics of the proteorhodopsin-containing marine flavobacterium Dokdonia sp. strain MED134
JM González, J Pinhassi, B Fernández-Gómez, M Coll-Lladó, ...
Applied and Environmental Microbiology 77 (24), 8676-8686, 2011
Mandates: US National Institutes of Health, Swedish Research Council for Environment …
Reconstruction of the evolution of microbial defense systems
P Puigbò, KS Makarova, DM Kristensen, YI Wolf, EV Koonin
BMC evolutionary biology 17, 1-13, 2017
Mandates: US National Institutes of Health
Does glyphosate affect the human microbiota?
P Puigbò, LI Leino, MJ Rainio, K Saikkonen, I Saloniemi, M Helander
Life 12 (5), 707, 2022
Mandates: Academy of Finland
Adaptation of bacteria to glyphosate: a microevolutionary perspective of the enzyme 5‐enolpyruvylshikimate‐3‐phosphate synthase
MJ Rainio, S Ruuskanen, M Helander, K Saikkonen, I Saloniemi, ...
Environmental microbiology reports 13 (3), 309-316, 2021
Mandates: Academy of Finland
Comparison of phylogenetic trees and search for a central trend in the “forest of life”
EV Koonin, P Puigbo, YI Wolf
Journal of Computational Biology 18 (7), 917-924, 2011
Mandates: US National Institutes of Health
The phylogenetic forest and the quest for the elusive tree of life
EV Koonin, YI Wolf, P Puigbo
Cold Spring Harbor symposia on quantitative biology 74, 205-213, 2009
Mandates: US National Institutes of Health
Genome-wide comparative analysis of phylogenetic trees: The prokaryotic forest of life
P Puigbò, YI Wolf, EV Koonin
Evolutionary Genomics, 241-269, 2019
Mandates: US National Institutes of Health
The mutational landscape of SARS-CoV-2
B Saldivar-Espinoza, P Garcia-Segura, N Novau-Ferré, G Macip, ...
International Journal of Molecular Sciences 24 (10), 9072, 2023
Mandates: European Commission
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