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Joshua Southern
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Year
A bayesian deep learning framework for end-to-end prediction of emotion from heartbeat
R Harper, J Southern
IEEE transactions on affective computing 13 (2), 985-991, 2020
1032020
Physics-informed deep neural network for rigid-body protein docking
F Sverrisson, J Feydy, J Southern, MM Bronstein, BE Correia
MLDD 2022-Machine Learning for Drug Discovery Workshop of ICLR 2022, 2022
182022
Curvature filtrations for graph generative model evaluation
J Southern, J Wayland, M Bronstein, B Rieck
Advances in Neural Information Processing Systems 36, 63036-63061, 2023
172023
End-to-end prediction of emotion from heartbeat data collected by a consumer fitness tracker
R Harper, J Southern
2019 8th international conference on affective computing and intelligent …, 2019
172019
Deep learning to detect macular atrophy in wet age-related macular degeneration using optical coherence tomography
W Wei, J Southern, K Zhu, Y Li, MF Cordeiro, K Veselkov
Scientific Reports 13 (1), 8296, 2023
92023
Deep sharpening of topological features for de novo protein design
Z Harteveld, J Southern, M Defferrard, A Loukas, P Vandergheynst, ...
ICLR2022 Machine Learning for Drug Discovery, 2022
72022
Exploring “dark-matter” protein folds using deep learning
Z Harteveld, A Van Hall-Beauvais, I Morozova, J Southern, C Goverde, ...
Cell systems 15 (10), 898-910. e5, 2024
42024
Understanding Virtual Nodes: Oversmoothing, Oversquashing, and Node Heterogeneity
J Southern, F Di Giovanni, M Bronstein, JF Lutzeyer
arXiv preprint arXiv:2405.13526, 2024
22024
Dynamic user response data collection method
R Harper, S De Vries, J Southern
US Patent App. 17/791,520, 2023
22023
Optimizing ingredient substitution using large language models to enhance phytochemical content in recipes
L Rita, J Southern, I Laponogov, K Higgins, K Veselkov
Machine Learning and Knowledge Extraction 6 (4), 2738-2752, 2024
12024
Accurate single domain scaffolding of three non-overlapping protein epitopes using deep learning
KM Castro, JL Watson, J Wang, J Southern, R Ayardulabi, S Georgeon, ...
bioRxiv, 2024.05. 07.592871, 2024
12024
Genomic-driven nutritional interventions for radiotherapy-resistant rectal cancer patient
J Southern, G Gonzalez, P Borgas, L Poynter, I Laponogov, Y Zhong, ...
Scientific Reports 13 (1), 14862, 2023
12023
Evaluation Metrics for Protein Structure Generation
J Southern, A Schneuing, MM Bronstein, B Correia
ICML 2023 Workshop on Computational Biology, 2023
1*2023
On the Expressive Power of Ollivier-Ricci Curvature on Graphs
J Southern, J Wayland, MM Bronstein, B Rieck
ICML 2023 Workshop on Topology, Algebra and Geometry, 2023
12023
Mental state determination method and system
J Southern, R Harper, S De Vries
US Patent App. 17/426,208, 2022
12022
Balancing Efficiency and Expressiveness: Subgraph GNNs with Walk-Based Centrality
J Southern, Y Eitan, G Bar-Shalom, M Bronstein, H Maron, F Frasca
arXiv preprint arXiv:2501.03113, 2025
2025
The Helicobacter pylori AI-Clinician: Harnessing Artificial Intelligence to Personalize H. pylori Treatment Recommendations
K Higgins, OP Nyssen, J Southern, I Laponogov, A CONSORTIUM, ...
arXiv preprint arXiv:2412.06841, 2024
2024
IDENTIFYING NUTRITIONAL AND PHARMACOLOGICAL TARGETS FOR ALLEVIATING POLYCYSTIC OVARY SYNDROME USING GENOMIC-DRIVEN MACHINE LEARNING
S Hanassab, J Southern, AV Olabode, T Heinis, A Abbara, ...
Fertility and Sterility 122 (4), e414, 2024
2024
Leveraging genomic-based machine learning to discover bioactive molecules that alleviate symptoms of polycystic ovary syndrome
A Olabode, S Hanassab, J Southern, C Izzi-Engbeaya, T Heinis, A Abbara, ...
Endocrine Abstracts 104, 2024
2024
Accurate single domain scaffolding of three non-overlapping protein epitopes using deep learning
B Correia, K Castro, J Watson, J Wang, J Southern, R Ayardulabi, ...
2024
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Articles 1–20