Computational pan-genomics: status, promises and challenges Briefings in bioinformatics 19 (1), 118-135, 2018 | 368 | 2018 |
MetaSV: an accurate and integrative structural-variant caller for next generation sequencing M Mohiyuddin, JC Mu, J Li, N Bani Asadi, MB Gerstein, A Abyzov, ... Bioinformatics 31 (16), 2741-2744, 2015 | 167 | 2015 |
An ensemble approach to accurately detect somatic mutations using SomaticSeq LT Fang, PT Afshar, A Chhibber, M Mohiyuddin, Y Fan, JC Mu, G Gibeling, ... Genome biology 16, 1-13, 2015 | 134 | 2015 |
Mutation of a U2 snRNA gene causes global disruption of alternative splicing and neurodegeneration Y Jia, JC Mu, SL Ackerman Cell 148 (1), 296-308, 2012 | 118 | 2012 |
VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications JC Mu, M Mohiyuddin, J Li, N Bani Asadi, MB Gerstein, A Abyzov, ... Bioinformatics 31 (9), 1469-1471, 2015 | 80 | 2015 |
Fast and accurate read alignment for resequencing JC Mu, H Jiang, A Kiani, M Mohiyuddin, N Bani Asadi, WH Wong Bioinformatics 28 (18), 2366-2373, 2012 | 75 | 2012 |
LongISLND: in silico sequencing of lengthy and noisy datatypes B Lau, M Mohiyuddin, JC Mu, LT Fang, N Bani Asadi, C Dallett, HYK Lam Bioinformatics 32 (24), 3829-3832, 2016 | 25 | 2016 |
Design of rate-compatible protograph-based LDPC codes with mixed circulants Y Xie, JC Mu, J Yuan 2010 6th International Symposium on Turbo Codes & Iterative Information …, 2010 | 25 | 2010 |
Leveraging long read sequencing from a single individual to provide a comprehensive resource for benchmarking variant calling methods JC Mu, P Tootoonchi Afshar, M Mohiyuddin, X Chen, J Li, N Bani Asadi, ... Scientific reports 5 (1), 14493, 2015 | 18 | 2015 |
Computational aspects of optional Pólya tree H Jiang, JC Mu, K Yang, C Du, L Lu, WH Wong Journal of Computational and Graphical Statistics 25 (1), 301-320, 2016 | 12 | 2016 |
Exploring the physiologic role of human gastroesophageal reflux by analyzing time‐series data from 24‐h gastric and esophageal pH recordings L Lu, JC Mu, S Sloan, PB Miner, JD Gardner Physiological Reports 2 (e12051), 2014 | 6 | 2014 |
Global disruption of alternative splicing and neurodegeneration is caused by mutation of a U2 snRNA gene Y Jia, JC Mu, SL Ackerman Cell 148 (1-2), 296, 2012 | 1 | 2012 |
Abstract LB-306: An ensemble approach to accurately detect somatic mutations via adaptive boosting LT Fang, PT Afshar, JC Mu, N Bani Asadi, WH Wong, HYK Lam Cancer Research 75 (15_Supplement), LB-306-LB-306, 2015 | | 2015 |
VarSim: A high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applications SUPPLEMENTARY INFORMATION JC Mu, M Mohiyuddin, J Li, NB Asadi, MB Gerstein, A Abyzov, WH Wong, ... | | 2014 |
Algorithms for the Alignment of Biological Sequences JC Mu Stanford University, 2014 | | 2014 |
Supplementary Materials for Fast and Accurate Read Alignment for Resequencing JC Mu, H Jiang, A Kiani, M Mohiyuddin, NB Asadi, WH Wong | | |
MetaSV: An accurate integrative structural-variant caller for next generation sequencing SUPPLEMENTARY INFORMATION M Mohiyuddin, JC Mu, J Li, NB Asadi, MB Gerstein, A Abyzov, WH Wong, ... | | |
A comprehensive and accurate RNA-Seq pipeline using a hybrid sequencing and algorithm approach PT Afshar, G Gibeling, R Sebra, M Mohiyuddin, JC Mu, H Tilgner, ... STAR 372, 54.3, 0 | | |
Classification of RNA Splice Junctions Based on Genomic Signals M Li, YS Long, J Mu | | |