Genome-wide prediction and functional characterization of the genetic basis of autism spectrum disorder A Krishnan, R Zhang, V Yao, CL Theesfeld, AK Wong, A Tadych, ... Nature neuroscience 19 (11), 1454-1462, 2016 | 458 | 2016 |
A community computational challenge to predict the activity of pairs of compounds M Bansal, J Yang, C Karan, MP Menden, JC Costello, H Tang, G Xiao, ... Nature biotechnology 32 (12), 1213-1222, 2014 | 344 | 2014 |
Current progress and open challenges for applying deep learning across the biosciences N Sapoval, A Aghazadeh, MG Nute, DA Antunes, A Balaji, R Baraniuk, ... Nature Communications 13 (1), 1728, 2022 | 258 | 2022 |
Transcriptome analysis of adult Caenorhabditis elegans cells reveals tissue-specific gene and isoform expression R Kaletsky, V Yao, A Williams, AM Runnels, A Tadych, S Zhou, ... PLoS genetics 14 (8), e1007559, 2018 | 202 | 2018 |
RNA identification of PRIME cells predicting rheumatoid arthritis flares DE Orange, V Yao, K Sawicka, J Fak, MO Frank, S Parveen, NE Blachere, ... New England Journal of Medicine 383 (3), 218-228, 2020 | 171 | 2020 |
Selective neuronal vulnerability in Alzheimer’s disease: a network-based analysis JP Roussarie, V Yao, P Rodriguez-Rodriguez, R Oughtred, J Rust, ... Neuron 107 (5), 821-835. e12, 2020 | 152 | 2020 |
Metabolic network rewiring of propionate flux compensates vitamin B12 deficiency in C. elegans E Watson, V Olin-Sandoval, MJ Hoy, CH Li, T Louisse, V Yao, A Mori, ... Elife 5, e17670, 2016 | 125 | 2016 |
Discriminatory power of combinatorial antigen recognition in cancer T cell therapies R Dannenfelser, GM Allen, B VanderSluis, AK Koegel, S Levinson, ... Cell systems 11 (3), 215-228. e5, 2020 | 79 | 2020 |
IMP 2.0: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks AK Wong, A Krishnan, V Yao, A Tadych, OG Troyanskaya Nucleic acids research 43 (W1), W128-W133, 2015 | 75 | 2015 |
An integrative tissue-network approach to identify and test human disease genes V Yao, R Kaletsky, W Keyes, DE Mor, AK Wong, S Sohrabi, CT Murphy, ... Nature biotechnology 36 (11), 1091-1099, 2018 | 68 | 2018 |
Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis RC Brewer, TV Lanz, CR Hale, GD Sepich-Poore, C Martino, AD Swafford, ... Science translational medicine 15 (684), eabq8476, 2023 | 50 | 2023 |
FNTM: a server for predicting functional networks of tissues in mouse J Goya, AK Wong, V Yao, A Krishnan, M Homilius, OG Troyanskaya Nucleic acids research 43 (W1), W182-W187, 2015 | 27 | 2015 |
Mapping the physiological and molecular markers of stress and SSRI antidepressant treatment in S100a10 corticostriatal neurons D Sargin, RU Chottekalapanda, KE Perit, V Yao, D Chu, DW Sparks, ... Molecular psychiatry 25 (5), 1112-1129, 2020 | 26 | 2020 |
Enabling precision medicine through integrative network models V Yao, AK Wong, OG Troyanskaya Journal of molecular biology 430 (18), 2913-2923, 2018 | 23 | 2018 |
Joint embedding of biological networks for cross-species functional alignment L Li, R Dannenfelser, Y Zhu, N Hejduk, S Segarra, V Yao Bioinformatics 39 (9), btad529, 2023 | 12 | 2023 |
Nucleosome-coupled expression differences in closely-related species Y Guan, V Yao, K Tsui, M Gebbia, MJ Dunham, C Nislow, ... BMC genomics 12, 1-10, 2011 | 10 | 2011 |
Accurate genome-wide predictions of spatio-temporal gene expression during embryonic development J Zhou, IE Schor, V Yao, CL Theesfeld, R Marco-Ferreres, A Tadych, ... PLoS genetics 15 (9), e1008382, 2019 | 9 | 2019 |
A loop-counting method for covariate-corrected low-rank biclustering of gene-expression and genome-wide association study data AV Rangan, CC McGrouther, J Kelsoe, N Schork, E Stahl, Q Zhu, ... PLoS computational biology 14 (5), e1006105, 2018 | 8 | 2018 |
Current Progress and Open Challenges for Applying Deep Learning across the Biosciences. Nat. Commun. 13, 1728 N Sapoval, A Aghazadeh, MG Nute, DA Antunes, A Balaji, R Baraniuk, ... | 6 | 2022 |
A cell autonomous regulator of neuronal excitability modulates tau in Alzheimer’s disease vulnerable neurons P Rodriguez-Rodriguez, LE Arroyo-Garcia, C Tsagkogianni, L Li, W Wang, ... Brain, awae051, 2024 | 4 | 2024 |