| Whole-genome sequencing surveillance and machine learning of the electronic health record for enhanced healthcare outbreak detection AJ Sundermann, J Chen, P Kumar, AM Ayres, ST Cho, C Ezeonwuka, ... Clinical Infectious Diseases 75 (3), 476-482, 2022 | 87 | 2022 |
| Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM Y Chen, H Lin, M Cole, A Morris, J Martinson, H Mckay, M Mimiaga, ... Microbiome 9, 1-18, 2021 | 58 | 2021 |
| Outbreak of Pseudomonas aeruginosa Infections from a Contaminated Gastroscope Detected by Whole Genome Sequencing Surveillance AJ Sundermann, J Chen, JK Miller, MI Saul, KA Shutt, MP Griffith, ... Clinical Infectious Diseases 73 (3), e638-e642, 2021 | 37 | 2021 |
| Isolation and Characterization of a Biosurfactant Producing Strain Pseudomonas Aeruginosa SMVIT 1 from Oil Contaminated Soil K Rath, AB Singh, S Chandan, RS Vatsala NISCAIR-CSIR, India, 2016 | 21 | 2016 |
| Genomic diversity of hospital-acquired infections revealed through prospective whole-genome sequencing-based surveillance MM Mustapha, VR Srinivasa, MP Griffith, ST Cho, DR Evans, K Waggle, ... Msystems 7 (3), e01384-21, 2022 | 18 | 2022 |
| Convergent evolution of antibiotic tolerance in patients with persistent methicillin-resistant Staphylococcus aureus bacteremia MM Elgrail, E Chen, MG Shaffer, V Srinivasa, MP Griffith, MM Mustapha, ... Infection and Immunity 90 (4), e00001-22, 2022 | 16 | 2022 |
| Hospital-associated Clostridium difficile infection and reservoirs within the hospital environment VR Srinivasa, R Hariri, LR Frank, L Kingsley, E Magee, M Pokrywka, ... American Journal of Infection Control 47 (7), 780-785, 2019 | 15 | 2019 |
| Two Artificial Tears Outbreak-Associated Cases of Extensively Drug-Resistant Pseudomonas aeruginosa Detected Through Whole Genome Sequencing–Based … AJ Sundermann, V Rangachar Srinivasa, EG Mills, MP Griffith, ... The Journal of Infectious Diseases 229 (2), 517-521, 2024 | 8 | 2024 |
| Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM. Microbiome 9: 237 Y Chen, H Lin, M Cole, A Morris, J Martinson, H Mckay, M Mimiaga, ... | 7 | 2021 |
| Empirically derived sequence similarity thresholds to study the genomic epidemiology of plasmids shared among healthcare-associated bacterial pathogens D Evans, A Sundermann, M Griffith, VR Srinivasa, M Mustapha, J Chen, ... EBioMedicine 93, 2023 | 5 | 2023 |
| Predictive model for severe COVID-19 using SARS-CoV-2 whole-genome sequencing and electronic health record data, March 2020-May 2021 L Zhu, JW Marsh, MP Griffith, K Collins, V Srinivasa, K Waggle, ... PloS one 17 (7), e0271381, 2022 | 5 | 2022 |
| Research and implementation of a whole-genome sequencing surveillance system for outbreak detection A Sundermann, M Griffith, VR Srinivasa, K Waggle, M Saul, A Ayres, ... Antimicrobial Stewardship & Healthcare Epidemiology 2 (S1), s82-s82, 2022 | 5 | 2022 |
| Genomic diversity of hospital-acquired infections revealed through prospective whole-genome sequencing-based surveillance. mSystems 7: e0138421 MM Mustapha, VR Srinivasa, MP Griffith, ST Cho, DR Evans, K Waggle, ... | 5 | 2022 |
| Real-time genomic epidemiologic investigation of a multispecies plasmid-associated hospital outbreak of NDM-5-producing Enterobacterales infections NJ Raabe, AL Valek, MP Griffith, E Mills, K Waggle, VR Srinivasa, ... International Journal of Infectious Diseases 142, 106971, 2024 | 4 | 2024 |
| Genomic epidemiologic investigation of a multispecies hospital outbreak of NDM-5-producing Enterobacterales infections NJ Raabe, AL Valek, MP Griffith, E Mills, K Waggle, VR Srinivasa, ... medRxiv, 2023 | 3 | 2023 |
| Genomic epidemiology of severe acute respiratory syndrome coronavirus 2 transmission among university students in Western Pennsylvania VR Srinivasa, MP Griffith, KD Waggle, M Johnson, L Zhu, JV Williams, ... The Journal of Infectious Diseases 228 (1), 37-45, 2023 | 3 | 2023 |
| Two artificial tears outbreak-associated cases of XDR Pseudomonas aeruginosa detected through whole genome sequencing-based surveillance AJ Sundermann, VR Srinivasa, EG Mills, MP Griffith, KD Waggle, ... medRxiv, 2023 | 3 | 2023 |
| Genomic Epidemiology of SARS-CoV-2 Transmission among University Students in Western Pennsylvania. VR Srinivasa, MP Griffith, KD Waggle, M Johnson, L Zhu, JV Williams, ... The Journal of Infectious Diseases, jiad041-jiad041, 2023 | 3 | 2023 |
| Genomic sequencing surveillance of patients colonized with vancomycin-resistant Enterococcus (VRE) improves detection of hospital-associated transmission AJ Sundermann, VR Srinivasa, EG Mills, MP Griffith, E Evans, J Chen, ... medRxiv, 2024 | 2 | 2024 |
| Methods for cost-efficient, whole genome sequencing surveillance for enhanced detection of outbreaks in a hospital setting KD Waggle, MP Griffith, AB Rokes, VR Srinivasa, D Ereifej, R Patrick, ... medRxiv, 2024.02. 16.24302955, 2024 | 2 | 2024 |
Lee H. HarrisonCenter for Genomic Epidemiology, University of PittsburghVerified email at edc.pitt.edu