| ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules H Ashkenazy, S Abadi, E Martz, O Chay, I Mayrose, T Pupko, N Ben-Tal Nucleic acids research 44 (W1), W344-W350, 2016 | 2922 | 2016 |
| ConSurf 2010: calculating evolutionary conservation in sequence and structure of proteins and nucleic acids H Ashkenazy, E Erez, E Martz, T Pupko, N Ben-Tal Nucleic acids research 38 (suppl 2), W529-W533, 2010 | 2059 | 2010 |
| GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters I Sela, H Ashkenazy, K Katoh, T Pupko Nucleic acids research 43 (W1), W7-W14, 2015 | 812 | 2015 |
| PredictProtein—an open resource for online prediction of protein structural and functional features G Yachdav, E Kloppmann, L Kajan, M Hecht, T Goldberg, T Hamp, ... Nucleic acids research 42 (W1), W337-W343, 2014 | 707 | 2014 |
| GUIDANCE: a web server for assessing alignment confidence scores O Penn, E Privman, H Ashkenazy, G Landan, D Graur, T Pupko Nucleic acids research 38 (suppl 2), W23-W28, 2010 | 673 | 2010 |
| ConSurf: Using Evolutionary Data to Raise Testable Hypotheses about Protein Function G Celniker, G Nimrod, H Ashkenazy, F Glaser, E Martz, I Mayrose, ... Israel Journal of Chemistry 53 (3‐4), 199-206, 2013 | 622 | 2013 |
| FastML: a web server for probabilistic reconstruction of ancestral sequences H Ashkenazy, O Penn, A Doron-Faigenboim, O Cohen, G Cannarozzi, ... Nucleic Acids Research 40 (W1), W580-W584, 2012 | 369 | 2012 |
| PredictProtein-predicting protein structure and function for 29 years M Bernhofer, C Dallago, T Karl, V Satagopam, M Heinzinger, M Littmann, ... Nucleic acids research 49 (W1), W535-W540, 2021 | 229 | 2021 |
| ConSurf‐DB: An accessible repository for the evolutionary conservation patterns of the majority of PDB proteins A Ben Chorin, G Masrati, A Kessel, A Narunsky, J Sprinzak, S Lahav, ... Protein Science 29 (1), 258-267, 2020 | 171 | 2020 |
| GLOOME: gain loss mapping engine O Cohen, H Ashkenazy, F Belinky, D Huchon, T Pupko Bioinformatics 26 (22), 2914-2915, 2010 | 125 | 2010 |
| Broad phylogenetic analysis of cation/proton antiporters reveals transport determinants G Masrati, M Dwivedi, A Rimon, Y Gluck-Margolin, A Kessel, H Ashkenazy, ... Nature Communications 9 (1), 4205, 2018 | 83 | 2018 |
| Commensal Pseudomonas strains facilitate protective response against pathogens in the host plant O Shalev, TL Karasov, DS Lundberg, H Ashkenazy, ... Nature Ecology & Evolution 6 (4), 383-396, 2022 | 66 | 2022 |
| Deep Panning: Steps towards Probing the IgOme A Ryvkin, H Ashkenazy, L Smelyanski, G Kaplan, O Penn, ... PLoS ONE 7 (8), e41469, 2012 | 62 | 2012 |
| Protein stability: a single recorded mutation aids in predicting the effects of other mutations in the same amino acid site G Wainreb, L Wolf, H Ashkenazy, Y Dehouck, N Ben-Tal Bioinformatics 27 (23), 3286-3292, 2011 | 62 | 2011 |
| MuD: an interactive web server for the prediction of non-neutral substitutions using protein structural data G Wainreb, H Ashkenazy, Y Bromberg, A Starovolsky-Shitrit, T Haliloglu, ... Nucleic Acids Research 38 (suppl 2), W523-W528, 2010 | 51 | 2010 |
| Peptides modulating conformational changes in secreted chaperones: from in silico design to preclinical proof of concept Y Kliger, O Levy, A Oren, H Ashkenazy, Z Tiran, A Novik, A Rosenberg, ... Proceedings of the National Academy of Sciences 106 (33), 13797-13801, 2009 | 48 | 2009 |
| Uncovering the co-evolutionary network among prokaryotic genes O Cohen, H Ashkenazy, D Burstein, T Pupko Bioinformatics 28 (18), i389-i394, 2012 | 46 | 2012 |
| Genetic variation, environment and demography intersect to shape Arabidopsis defense metabolite variation across Europe E Katz, JJ Li, B Jaegle, H Ashkenazy, SR Abrahams, C Bagaza, S Holden, ... Elife 10, e67784, 2021 | 45 | 2021 |
| Phage display peptide libraries: deviations from randomness and correctives A Ryvkin, H Ashkenazy, Y Weiss-Ottolenghi, C Piller, T Pupko, ... Nucleic acids research 46 (9), e52-e52, 2018 | 43 | 2018 |
| Spatial metatranscriptomics resolves host–bacteria–fungi interactomes S Saarenpää, O Shalev, H Ashkenazy, V Carlos, DS Lundberg, D Weigel, ... Nature biotechnology 42 (9), 1384-1393, 2024 | 41 | 2024 |
Tal PupkoProfessor of Life Sciences, Tel-Aviv UniversityVerified email at tauex.tau.ac.il
