Stinus Lindgreen

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Paul P. GardnerUniversity of Otago, New ZealandVerified email at otago.ac.nz
Ludovic OrlandoCentre for Anthropobiology & Genomics of Toulouse, CNRS/Univ Paul SabatierVerified email at univ-tlse3.fr
Anders KroghDepartment of Computer Science and Center for Health Data Science, University of CopenhagenVerified email at di.ku.dk
Mikkel SchubertCenter for Basic Metabolic Research, UCPH (ORCID 0000-0003-2401-9921)Verified email at sund.ku.dk
Eske WillerslevCentre for GeoGenetics, University of CopenhagenVerified email at snm.ku.dk
Karen L. AdairUniversity of OregonVerified email at uoregon.edu
Eric P NawrockiNational Center for Biotechnology Information (NCBI), NLM, NIHVerified email at ncbi.nlm.nih.gov
Jennifer DaubUniversity of EdinburghVerified email at ed.ac.uk
Sam Griffiths-JonesFaculty of Biology, Medicine and Health. University of ManchesterVerified email at manchester.ac.uk
Robert D. FinnMicrobiome Informatics Team Leader, EMBL-EBI, Wellcome Trust Genome Campus, Hinxton, Cambs, CB10 1SDVerified email at ebi.ac.uk
Diana L KolbeResearch Scientist, IIHG, University of IowaVerified email at uiowa.edu
Sean R. EddyHHMI & Harvard UniversityVerified email at fas.harvard.edu
Alex BatemanHead of Protein Sequence Resources, EMBL-EBIVerified email at ebi.ac.uk
Aurélien GinolhacUniversity of LuxembourgVerified email at uni.lu
Jakob Skou PedersenProfessor at Department of Molecular Medicine, Aarhus UniversityVerified email at ki.au.dk
Eivind ValenProfessor, University of OsloVerified email at fas.harvard.edu
Robin AnderssonUniversity of CopenhagenVerified email at bio.ku.dk
Albin SandelinThe Bioinformatics Centre, Department of Biology & BRIC, Copenhagen University, DenmarkVerified email at binf.ku.dk
M Thomas P GilbertUniversity of CopenhagenVerified email at sund.ku.dk
Morten RasmussenMirvie IncVerified email at mirvie.com

Stinus Lindgreen

Current Member of Parliament

Verified email at ft.dk - Homepage

High-throughput sequencing genomics metagenomics algorithmics ancient DNA


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
AdapterRemoval v2: rapid adapter trimming, identification, and read merging M Schubert, S Lindgreen, L Orlando BMC research notes 9, 1-7, 2016	1737	2016
Ancient human genome sequence of an extinct Palaeo-Eskimo M Rasmussen, Y Li, S Lindgreen, JS Pedersen, A Albrechtsen, I Moltke, ... Nature 463 (7282), 757-762, 2010	1034	2010
Rfam: updates to the RNA families database PP Gardner, J Daub, JG Tate, EP Nawrocki, DL Kolbe, S Lindgreen, ... Nucleic acids research 37 (suppl_1), D136-D140, 2009	1016	2009
An Aboriginal Australian genome reveals separate human dispersals into Asia M Rasmussen, X Guo, Y Wang, KE Lohmueller, S Rasmussen, ... Science 334 (6052), 94-98, 2011	909	2011
AdapterRemoval: easy cleaning of next-generation sequencing reads S Lindgreen BMC research notes 5, 1-7, 2012	681	2012
Improving ancient DNA read mapping against modern reference genomes M Schubert, A Ginolhac, S Lindgreen, JF Thompson, KAS Al-Rasheid, ... BMC genomics 13, 1-15, 2012	365	2012
An evaluation of the accuracy and speed of metagenome analysis tools S Lindgreen, KL Adair, P Gardner Scientific Reports 6 (19233), 2016	364	2016
Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome JS Pedersen, E Valen, AMV Velazquez, BJ Parker, M Rasmussen, ... Genome research 24 (3), 454-466, 2014	193	2014
MASTR: multiple alignment and structure prediction of non-coding RNAs using simulated annealing S Lindgreen, PP Gardner, A Krogh Bioinformatics 23 (24), 3304-3311, 2007	97	2007
Measuring covariation in RNA alignments: physical realism improves information measures S Lindgreen, PP Gardner, A Krogh Bioinformatics 22 (24), 2988-2995, 2006	78	2006
WAR: Webserver for aligning structural RNAs E Torarinsson, S Lindgreen Nucleic acids research 36 (suppl_2), W79-W84, 2008	56	2008
Adaptable probabilistic mapping of short reads using position specific scoring matrices P Kerpedjiev, J Frellsen, S Lindgreen, A Krogh BMC bioinformatics 15, 1-17, 2014	53	2014
Robust identification of noncoding RNA from transcriptomes requires phylogenetically-informed sampling S Lindgreen, SU Umu, ASW Lai, H Eldai, W Liu, S McGimpsey, ... PLoS computational biology 10 (10), e1003907, 2014	45	2014
Above and belowground community strategies respond to different global change drivers KL Adair, S Lindgreen, AM Poole, LM Young, M Bernard-Verdier, ... Scientific Reports 9 (1), 2540, 2019	44	2019
Nuclear Pore-Like Structures in a Compartmentalized Bacterium E Sagulenko, A Nouwens, RI Webb, K Green, B Yee, G Morgan, A Leis, ... PLOS ONE 12 (2), 2017	38	2017
Major sulfonate transporter Soa1 in Saccharomyces cerevisiae and considerable substrate diversity in its fungal family S Holt, H Kankipati, S De Graeve, G Van Zeebroeck, ... Nature Communications 8 (1), 14247, 2017	24	2017
Predictors and trajectories of treatment response to SSRIs in patients suffering from PTSD AK Nøhr, H Eriksson, M Hobart, I Moltke, R Buller, A Albrechtsen, ... Psychiatry research 301, 113964, 2021	18	2021
Microsatellite records for volume 8, issue 2 D Almojil, MC Arias, RR Beasley, Y Chen, RW Clark, Y Dong, Z Dong, ... Conservation Genetics Resources 8 (2), 1-28, 2016	10	2016
SNPest: a probabilistic graphical model for estimating genotypes S Lindgreen, A Krogh, JS Pedersen BMC research notes 7, 1-12, 2014	8	2014
Genomic, Transcriptomic, and Phenotypic Analyses of Neisseria meningitidis Isolates from Disease Patients and Their Household Contacts X Ren, DA Eccles, GA Greig, J Clapham, NE Wheeler, S Lindgreen, ... Msystems 2 (6), 10.1128/msystems. 00127-17, 2017	5	2017

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