| Sensitive and specific multi-cancer detection and localization using methylation signatures in cell-free DNA MC Liu, GR Oxnard, EA Klein, C Swanton, MV Seiden, MC Liu, ... Annals of Oncology 31 (6), 745-759, 2020 | 1178 | 2020 |
| Philosopher: a versatile toolkit for shotgun proteomics data analysis F da Veiga Leprevost, SE Haynes, DM Avtonomov, HY Chang, ... Nature methods 17 (9), 869-870, 2020 | 399 | 2020 |
| MLL1 inhibition reprograms epiblast stem cells to naive pluripotency H Zhang, S Gayen, J Xiong, B Zhou, AK Shanmugam, Y Sun, H Karatas, ... Cell stem cell 18 (4), 481-494, 2016 | 85 | 2016 |
| Fast parallel tandem mass spectral library searching using GPU hardware acceleration LA Baumgardner, AK Shanmugam, H Lam, JK Eng, DB Martin Journal of proteome research 10 (6), 2882-2888, 2011 | 62 | 2011 |
| Effective leveraging of targeted search spaces for improving peptide identification in tandem mass spectrometry based proteomics AK Shanmugam, AI Nesvizhskii Journal of proteome research 14 (12), 5169-5178, 2015 | 33 | 2015 |
| Utility of RNA-seq and GPMDB protein observation frequency for improving the sensitivity of protein identification by tandem MS AK Shanmugam, AK Yocum, AI Nesvizhskii Journal of proteome research 13 (9), 4113-4119, 2014 | 32 | 2014 |
| Highlights from the 1st ISCB latin american student council symposium 2014 RG Parra, FL Simonetti, MA Hasenahuer, GJ Olguin-Orellana, ... BMC bioinformatics 16, 1-4, 2015 | 29* | 2015 |
| Aneuploidy and recombination in the human preimplantation embryo. Copy number variation analysis and genome-wide polymorphism genotyping M Konstantinidis, K Ravichandran, Z Gunes, R Prates, NN Goodall, ... Reproductive BioMedicine Online 40 (4), 479-493, 2020 | 11 | 2020 |
| Ten simple rules for starting a regional student group AK Shanmugam, G Macintyre, M Michaut, T Abeel PLoS Computational Biology 9 (11), e1003340, 2013 | 10 | 2013 |
| The ISCB student council internship program: Expanding computational biology capacity worldwide J Anupama, M Francescatto, F Rahman, N Fatima, D DeBlasio, ... PLOS Computational Biology 14 (1), e1005802, 2018 | 6 | 2018 |
| Highlights from the ISCB Student Council Symposium 2013 T Di Domenico, C Prudence, E Vicedo, E Guney, A Jigisha, ... BMC bioinformatics 15, 1-4, 2014 | 5 | 2014 |
| Establishing and managing a global student network A Shanmugam, G Macintyre PLoS Computational Biology 10 (10), e1003920, 2014 | 3 | 2014 |
| Highlights from the 1st ISCB latin american student council symposium 2014 R Gonzalo Parra, FL Simonetti, MA Hasenahuer, GJ Olguin-Orellana, ... BMC BIOINFORMATICS 16, 2015 | 1 | 2015 |
| Internships initiative of the ISCB Student Council N Chelbat, AK Shanmugam, VP Satagopam EMBnet. journal 16 (1), 3, 2010 | 1 | 2010 |
| Reporting of Mosaics as High-level and Low level mosaics makes more number of embryos available as alternatives for transfer when no euploid embryos are available S Sawarkar, A Shanmugam, L Ribustello, P Colls, M Large, S Munne, ... Reproductive BioMedicine Online 38, e16-e17, 2019 | | 2019 |
| Variant detection by NGS from embryo biopsies SS Sawarkar, A Shanmugam, P Patrizio, SB Munne Fertility and Sterility 110 (4), e418, 2018 | | 2018 |
| Expanded carrier screening reveals insights into enrichment of specific disorders within a reproductive genomic space L Hurd, U Schick, J Hayes, J Olberding, A Shanmugam, A Manoharan, ... Fertility and Sterility 108 (3), e263, 2017 | | 2017 |
| Integrative Analysis Frameworks for Improved Peptide and Protein Identifications from Tandem Mass Spectrometry Data. AK Shanmugam | | 2015 |
| Highlights from the 1st ISCB Latin American Student Council Symposium 2014 GJ Olguin Orellana, RG Parra, F Simonetti, MA Hasenahuer, ... | | 2014 |
Alexey NesvizhskiiGodfrey D. Stobbe Professor of Bioinformatics @ University of MichiganVerified email at umich.edu
