| Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals M Nagasaki, J Yasuda, F Katsuoka, N Nariai, K Kojima, Y Kawai, ... Nature communications 6 (1), 8018, 2015 | 435 | 2015 |
| Japonica array: improved genotype imputation by designing a population-specific SNP array with 1070 Japanese individuals Y Kawai, T Mimori, K Kojima, N Nariai, I Danjoh, R Saito, J Yasuda, ... Journal of human genetics 60 (10), 581-587, 2015 | 156 | 2015 |
| Cohort profile: Tohoku medical megabank project birth and three-generation cohort study (TMM BirThree cohort study): rationale, progress and perspective S Kuriyama, H Metoki, M Kikuya, T Obara, M Ishikuro, C Yamanaka, ... International journal of epidemiology 49 (1), 18-19m, 2020 | 154 | 2020 |
| HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data N Nariai, K Kojima, S Saito, T Mimori, Y Sato, Y Kawai, ... BMC genomics 16, 1-6, 2015 | 100 | 2015 |
| TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads N Nariai, K Kojima, T Mimori, Y Sato, Y Kawai, Y Yamaguchi-Kabata, ... BMC genomics 15, 1-9, 2014 | 56 | 2014 |
| Genome analyses for the Tohoku Medical Megabank Project towards establishment of personalized healthcare J Yasuda, K Kinoshita, F Katsuoka, I Danjoh, M Sakurai-Yageta, ... The journal of biochemistry 165 (2), 139-158, 2019 | 46 | 2019 |
| iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data T Mimori, N Nariai, K Kojima, M Takahashi, A Ono, Y Sato, ... BMC systems biology 7, 1-8, 2013 | 39 | 2013 |
| A Bayesian approach for estimating allele-specific expression from RNA-Seq data with diploid genomes N Nariai, K Kojima, T Mimori, Y Kawai, M Nagasaki BMC genomics 17, 7-17, 2016 | 30 | 2016 |
| CD45+CD326+ Cells are Predictive of Poor Prognosis in Non–Small Cell Lung Cancer Patients K Ishizawa, M Yamanaka, Y Saiki, E Miyauchi, S Fukushige, T Akaishi, ... Clinical Cancer Research 25 (22), 6756-6763, 2019 | 26 | 2019 |
| Novel metric for hyperbolic phylogenetic tree embeddings H Matsumoto, T Mimori, T Fukunaga Biology Methods and Protocols 6 (1), bpab006, 2021 | 24 | 2021 |
| STR-realigner: a realignment method for short tandem repeat regions K Kojima, Y Kawai, K Misawa, T Mimori, M Nagasaki BMC genomics 17, 1-15, 2016 | 24 | 2016 |
| A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads K Kojima, N Nariai, T Mimori, M Takahashi, Y Yamaguchi-Kabata, Y Sato, ... Bioinformatics 29 (22), 2835-2843, 2013 | 20 | 2013 |
| AP-SKAT: highly-efficient genome-wide rare variant association test T Hasegawa, K Kojima, Y Kawai, K Misawa, T Mimori, M Nagasaki BMC genomics 17, 1-8, 2016 | 15 | 2016 |
| Construction of full-length Japanese reference panel of class I HLA genes with single-molecule, real-time sequencing T Mimori, J Yasuda, Y Kuroki, TF Shibata, F Katsuoka, S Saito, N Nariai, ... The Pharmacogenomics Journal 19 (2), 136-146, 2019 | 14 | 2019 |
| GeoPhy: differentiable phylogenetic inference via geometric gradients of tree topologies T Mimori, M Hamada Advances in Neural Information Processing Systems 36, 2023 | 13 | 2023 |
| HLA-VBSeq v2: improved HLA calling accuracy with full-length Japanese class-I panel YY Wang, T Mimori, SS Khor, O Gervais, Y Kawai, Y Hitomi, K Tokunaga, ... Human genome variation 6 (1), 29, 2019 | 13 | 2019 |
| Maternity Log study: a longitudinal lifelog monitoring and multiomics analysis for the early prediction of complicated pregnancy J Sugawara, D Ochi, R Yamashita, T Yamauchi, D Saigusa, M Wagata, ... BMJ open 9 (2), e025939, 2019 | 12 | 2019 |
| ToMMo Japanese Reference Panel Project M Nagasaki, J Yasuda, F Katsuoka, N Nariai, K Kojima, Y Kawai, ... Rare variant discovery by deep whole-genome sequencing of 1, 2015 | 12 | 2015 |
| SUGAR: graphical user interface-based data refiner for high-throughput DNA sequencing Y Sato, K Kojima, N Nariai, Y Yamaguchi-Kabata, Y Kawai, M Takahashi, ... BMC genomics 15, 1-5, 2014 | 12 | 2014 |
| Construction of JRG (Japanese reference genome) with single-molecule real-time sequencing M Nagasaki, Y Kuroki, TF Shibata, F Katsuoka, T Mimori, Y Kawai, ... Human Genome Variation 6 (1), 27, 2019 | 11 | 2019 |
Yosuke KawaiDeputy Project Manager, National Center for Global Health and MedicineVerified email at ri.ncgm.go.jp