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Angelica Nakagawa Lima
Angelica Nakagawa Lima
Senior Bioinformatics, Heart Institute (InCor) - University of São Paulo (USP)
Verified email at hc.fm.usp.br
Title
Cited by
Cited by
Year
Use of machine learning approaches for novel drug discovery
AN Lima, EA Philot, GHG Trossini, LPB Scott, VG Maltarollo, KM Honorio
Expert opinion on drug discovery 11 (3), 225-239, 2016
2712016
Before and after AlphaFold2: An overview of protein structure prediction
LMF Bertoline, AN Lima, JE Krieger, SK Teixeira
Frontiers in bioinformatics 3, 1120370, 2023
1412023
Gold (III) complexes with ONS-Tridentate thiosemicarbazones: Toward selective trypanocidal drugs
AR Rettondin, ZA Carneiro, ACR Gonçalves, VF Ferreira, CG Oliveira, ...
European journal of medicinal chemistry 120, 217-226, 2016
512016
Structural dynamics of DPP-4 and its influence on the projection of bioactive ligands
SQ Pantaleão, EA Philot, PT de Resende-Lara, AN Lima, D Perahia, ...
Molecules 23 (2), 490, 2018
412018
Drift-diffusion (DrDiff) framework determines kinetics and thermodynamics of two-state folding trajectory and tunes diffusion models
FC Freitas, AN Lima, VG Contessoto, PC Whitford, RJ Oliveira
The Journal of Chemical Physics 151 (11), 2019
182019
Interaction between 1-pyrenesulfonic acid and albumin: Moving inside the protein
L de Carvalho Bertozo, EA Philot, AN Lima, PT de Resende Lara, ...
Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy 208, 243-254, 2019
182019
Predicting regions prone to protein aggregation based on SVM algorithm
CA Moreira, EA Philot, AN Lima, AL Scott
Applied Mathematics and Computation 359, 502-511, 2019
172019
Effects of pH and aggregation in the human prion conversion into scrapie form: a study using molecular dynamics with excited normal modes
AN Lima, RJ de Oliveira, ASK Braz, MG de Souza Costa, D Perahia, ...
European Biophysics Journal 47, 583-590, 2018
162018
GANM: A protein–ligand docking approach based on genetic algorithm and normal modes
AN Lima, EA Philot, D Perahia, ASK Braz, LPB Scott
Applied Mathematics and Computation 219 (2), 511-520, 2012
122012
Methyl divanillate: redox properties and binding affinity with albumin of an antioxidant and potential NADPH oxidase inhibitor
DN De Vasconcelos, AN Lima, EA Philot, AL Scott, IAF Boza, ...
RSC advances 9 (35), 19983-19992, 2019
112019
Before and after AlphaFold2: an overview of protein structure prediction. Front Bioinform 3: 1120370
LMF Bertoline, AN Lima, JE Krieger, SK Teixeira
62023
Virtual screening and in vitro assays of novel hits as promising DPP-4 inhibitors
SQ Pantaleão, EA Philot, H de Paula, MI de Sairre, AN Lima, LM Pires, ...
Biochimie 194, 43-50, 2022
52022
Nifuroxazide as JAK2 inhibitor: A binding mode proposal and Hel cell proliferation assay
MOL da Costa, TFA Pavani, AN Lima, AL Scott, DFV Ramos, M Lazarini, ...
European Journal of Pharmaceutical Sciences 162, 105822, 2021
42021
Vinicius de Godoi Contessoto, Paul C Whitford, and Ronaldo Junio de Oliveira. Drift-diffusion (drdiff) framework determines kinetics and thermodynamics of two-state folding …
FC Freitas, AN Lima
The Journal of chemical physics 151 (11), 114106, 2019
32019
Integrated protocol to design potential inhibitors of dipeptidyl peptidase-4 (DPP-4)
SQ Pantaleão, EA Philot, M de Oliveira Almeida, AN Lima, MI de Sairre, ...
Current Topics in Medicinal Chemistry 20 (3), 209-226, 2020
22020
Considering Global and Local Conformational Changes in Molecular Docking
EA Philot, AN Lima, PT Resende-Lara, PC Tuffaneto, LPB Scott
JSM Chemistry 4 (3), 1031, 2016
12016
Estudo estrutural e funcional da NS1 do vÃrus Zika e alguns de seus mutantes por meio de dinâ mica molecular e aná lise de modos normais
AN Lima, AL dos Santos, AL Scott, ASK Braz
VIII ENCONTRO DE INICIAÇ ÃO CIENTà FICA-2018 (ENCERRADO), 2018
2018
Simulações moleculares: uma área naturalmente interdisciplinar
P Homem de Mello, AN Lima, CM Aono, E Costa, EA Philot, ...
Interciente 2, 72-90, 2015
2015
Transition between PrPC and PrPSc to wild type and mutants studied by normal mode analysis and activated molecular dynamics simulations
AN Lima, ASK Braz, MGS Costa, D Perahia, LPB Scott
PRION 8, 37-38, 2014
2014
Developing a methodology for protein-ligand docking based on genetic algorithm and rotamer library
EA Philot, AN Lima, LP Scott, ASK Braz
2011
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Articles 1–20