| Markov state models to study the functional dynamics of proteins in the wake of machine learning KA Konovalov, IC Unarta, S Cao, EC Goonetilleke, X Huang JACS Au 1 (9), 1330-1341, 2021 | 88 | 2021 |
| GraphVAMPnets for uncovering slow collective variables of self-assembly dynamics B Liu, M Xue, Y Qiu, KA Konovalov, MS O’Connor, X Huang The Journal of Chemical Physics 159 (9), 2023 | 21 | 2023 |
| COGcollator: a web server for analysis of distant relationships between homologous protein families DV Dibrova, KA Konovalov, VV Perekhvatov, KV Skulachev, ... Biology Direct 12, 1-11, 2017 | 18 | 2017 |
| Multiscale computation delivers organophosphorus reactivity and stereoselectivity to immunoglobulin scavengers YA Mokrushina, AV Golovin, IV Smirnov, SD Chatziefthimiou, ... Proceedings of the National Academy of Sciences 117 (37), 22841-22848, 2020 | 14 | 2020 |
| 8-Oxo-guanine DNA damage induces transcription errors by escaping two distinct fidelity control checkpoints of RNA polymerase II KA Konovalov, F Pardo-Avila, CKM Tse, J Oh, D Wang, X Huang Journal of Biological Chemistry 294 (13), 4924-4933, 2019 | 14 | 2019 |
| Searching for signatures of positive selection in cytochrome b gene associated with subterranean lifestyle in fast-evolving arvicolines (Arvicolinae, Cricetidae … OV Bondareva, NA Potapova, KA Konovalov, TV Petrova, NI Abramson BMC Ecology and Evolution 21 (1), 92, 2021 | 11 | 2021 |
| Recent developments in integral equation theory for solvation to treat density inhomogeneity at solute–solvent interface S Cao, KA Konovalov, IC Unarta, X Huang Advanced Theory and Simulations 2 (7), 1900049, 2019 | 10 | 2019 |
| COGNAT: a web server for comparative analysis of genomic neighborhoods OI Klimchuk, KA Konovalov, VV Perekhvatov, KV Skulachev, DV Dibrova, ... Biology Direct 12, 1-7, 2017 | 9 | 2017 |
| Disease mutations and phosphorylation alter the allosteric pathways involved in autoinhibition of protein phosphatase 2A KA Konovalov, CG Wu, Y Qiu, VK Balakrishnan, PS Parihar, MS O’Connor, ... The Journal of Chemical Physics 158 (21), 2023 | 8 | 2023 |
| A comprehensive mechanism for 5-carboxylcytosine-induced transcriptional pausing revealed by Markov state models KA Konovalov, W Wang, G Wang, EC Goonetilleke, X Gao, D Wang, ... Journal of Biological Chemistry 296, 2021 | 7 | 2021 |
| B56δ long-disordered arms form a dynamic PP2A regulation interface coupled with global allostery and Jordan’s syndrome mutations CG Wu, VK Balakrishnan, RA Merrill, PS Parihar, K Konovolov, YC Chen, ... Proceedings of the National Academy of Sciences 121 (1), e2310727120, 2024 | 6 | 2024 |
| Terminal alkyne-modified DNA Aptamers with enhanced protein binding affinities EM Kohn, K Konovalov, CA Gomez, GN Hoover, AK Yik, X Huang, ... ACS Chemical Biology 18 (9), 1976-1984, 2023 | 6 | 2023 |
| Convergent adaptation in mitochondria of phylogenetically distant birds: does it exist? V Burskaia, I Artyushin, NA Potapova, K Konovalov, GA Bazykin Genome biology and evolution 13 (7), evab113, 2021 | 6 | 2021 |
| Conformational selection turns on phenylalanine hydroxylase KA Konovalov, W Wang, X Huang Journal of Biological Chemistry 293 (51), 19544-19545, 2018 | 3 | 2018 |
| Allosteric communication across the μ-opioid receptor-Gi1 protein complex induced by ligands of varying efficacy B Fiorillo, R Ghosh, K Konovalov, D Provasi, M Filizola Biophysical Journal 123 (3), 100a, 2024 | | 2024 |
| Structural basis for saxitoxin congener binding and neutralization by anuran saxiphilins S Zakrzewska, SA Nixon, Z Chen, HS Hajare, ER Park, JV Mulcahy, ... bioRxiv, 2024.10. 01.616181, 2024 | | 2024 |
| Molecular Dynamics Simulations and Kinetic Network Models Elucidate RNA Polymerase Transcription Elongation Mechanisms IC Unarta, KA Konovalov, X Wang, GD Suarez, X Huang | | 2021 |
| Mechanisms of Transcription: RNA Polymerase II Elongation Complex with DNA Modifications Studied with Molecular Dynamics Simulations K Konovalov PQDT-Global, 2021 | | 2021 |
| Inspecting COGs with COGcollator as a method to avoid pitfalls in phylogenomic analysis DV Dibrova, KA Konovalov, VV Perekhvatov, KV Skulachev, ... Molecular Phylogenetics, 73-73, 2018 | | 2018 |
