| Large-scale public data reuse to model immunotherapy response and resistance J Fu, K Li, W Zhang, C Wan, J Zhang, P Jiang, XS Liu Genome medicine 12, 1-8, 2020 | 784 | 2020 |
| Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis R Zheng, C Wan, S Mei, Q Qin, Q Wu, H Sun, CH Chen, M Brown, ... Nucleic acids research 47 (D1), D729-D735, 2019 | 700 | 2019 |
| Lisa: inferring transcriptional regulators through integrative modeling of public chromatin accessibility and ChIP-seq data Q Qin, J Fan, R Zheng, C Wan, S Mei, Q Wu, H Sun, M Brown, J Zhang, ... Genome biology 21, 1-14, 2020 | 222 | 2020 |
| Integrative analyses of single-cell transcriptome and regulome using MAESTRO C Wang, D Sun, X Huang, C Wan, Z Li, Y Han, Q Qin, J Fan, X Qiu, Y Xie, ... Genome biology 21, 1-28, 2020 | 155 | 2020 |
| Enhanced efficacy of simultaneous PD-1 and PD-L1 immune checkpoint blockade in high-grade serous ovarian cancer C Wan, MP Keany, H Dong, LF Al-Alem, UM Pandya, S Lazo, K Boehnke, ... Cancer research 81 (1), 158-173, 2021 | 127 | 2021 |
| Cistrome-GO: a web server for functional enrichment analysis of transcription factor ChIP-seq peaks S Li, C Wan, R Zheng, J Fan, X Dong, CA Meyer, XS Liu Nucleic acids research 47 (W1), W206-W211, 2019 | 80 | 2019 |
| Determinants of transcription factor regulatory range CH Chen, R Zheng, C Tokheim, X Dong, J Fan, C Wan, Q Tang, M Brown, ... Nature communications 11 (1), 2472, 2020 | 59 | 2020 |
| MetaTiME integrates single-cell gene expression to characterize the meta-components of the tumor immune microenvironment Y Zhang, G Xiang, AY Jiang, A Lynch, Z Zeng, C Wang, W Zhang, J Fan, ... Nature communications 14 (1), 2634, 2023 | 13 | 2023 |
| Cistrome Data Browser and Toolkit: analyzing human and mouse genomic data using compendia of ChIP-seq and chromatin accessibility data R Zheng, X Dong, C Wan, X Shi, X Zhang, CA Meyer Quantitative Biology 8, 267-276, 2020 | 13 | 2020 |
| Nuclear PTEN Regulates Thymidylate Biosynthesis in Human Prostate Cancer Cell Lines ZN Loh, ME Wang, C Wan, JM Asara, Z Ji, M Chen Metabolites 13 (8), 939, 2023 | 1 | 2023 |
| MetaTiME: Meta-components of the Tumor Immune Microenvironment Y Zhang, G Xiang, AY Jiang, A Lynch, Z Zeng, C Wang, W Zhang, J Fan, ... bioRxiv, 2022.08. 05.502989, 2022 | 1 | 2022 |
| EpiFoundation: A Foundation Model for Single-Cell ATAC-seq via Peak-to-Gene Alignment J Wu, C Wan, Z Ji, Y Zhou, W Hou bioRxiv, 2025.02. 05.636688, 2025 | | 2025 |
| Vcam1+ Fibro-adipogenic Progenitors Mark Fatty Infiltration in Chronic Limb Threatening Ischemia Q Dai, C Wan, Y Xu, K Fei, LA Olivere, B Garrett, L Akers, D Peters, J Otto, ... bioRxiv, 2024 | | 2024 |
| Nr3c1-Sfrp1 Axis Regulates the Adipogenic Differentiation of Vcam1+ Fibro-adipogenic Progenitors in Chronic Limb-threatening Ischemia Q Dai, C Wan, Y Xu, B Garrett, L Akers, D Peters, J Otto, CD Kontos, J Ji, ... JVS-Vascular Science 5, 2024 | | 2024 |
| Secreted Frizzled-Related Protein 1 Mediates Adipogenic Differentiation of Vascular Cell Adhesion Protein 1 Fibroadipogenic Progenitors in the Ischemic Limb Q Dai, C Wan, K Fei, Y Xu, D Peters, B Garrett, J Otto, CD Kontos, Z Ji, ... Circulation 148 (Suppl_1), A18426-A18426, 2023 | | 2023 |
| Integrating multiple single-cell multi-omics samples with Smmit C Wan, Z Ji bioRxiv, 2023 | | 2023 |
| Pathogenic Th17 Cells in Autoimmune Myasthenia Gravis Exhibit a Pro-inflammatory Transcriptomic Signature that Promotes Disease Pathogenesis (S41. 008) Y Li, J Yi, C Wan, Z Ji, T Karatz, J Howard, J Massey, V Juel, ... Neurology 98 (18_supplement), 2862, 2022 | | 2022 |
| PATHOGENIC TH17 CELLS IN AUTOIMMUNE MYASTHENIA GRAVIS EXHIBIT A PRO-INFLAMMATORY TRANSCRIPTOMIC SIGNATURE THAT PROMOTE DISEASE PATHOGENESIS Y Li, C Wan, Z Ji, J Yi, J Guptill MUSCLE & NERVE 64, S91-S91, 2021 | | 2021 |
| Comparative Analysis of Gene Regulation in Single Cells Using Compass C Wan, Z Ye, T Zhang, H Ma, M Chen, W Hou, Z Ji Available at SSRN 4973451, 0 | | |
Xiaole Shirley LiuCEO, GV20 TherapeuticsVerified email at ds.dfci.harvard.edu