Alex de Mendoza

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Iñaki Ruiz-TrilloICREA research professor at Institut de Biologia Evolutiva (CSIC-UPF)Verified email at ibe.upf-csic.es
Arnau Sebé-PedrósICREA Research Professor CRG; Associate Faculty Wellcome Sanger InstituteVerified email at crg.eu
Ryan ListerUniversity of Western Australia; Harry Perkins Institute of Medical ResearchVerified email at uwa.edu.au
Sam BuckberryTelethon Kids Institute // ANUVerified email at telethonkids.org.au
Ozren BogdanovicAndalusian Center for Developmental Biology (CSIC/UPO/JA)Verified email at csic.es
Guifré TorruellaPostDoc, Institut de Biologia EvolutivaVerified email at ibe.upf-csic.es
Andrew RogerProfessor of Biochemistry and Molecular Biology, Dalhousie UnviersityVerified email at dal.ca
Ana RiesgoDepartment of Biodiversity and Evolutionary Biology, Museo Nacional de Ciencias Naturales de MadridVerified email at mncn.csic.es
Matthew W. BrownDonald L Hall Professor in Biology, Professor, Department of Biological SciencesVerified email at msstate.edu
Martin CarrSenior Lecturer, University of HuddersfieldVerified email at hud.ac.uk
Andreas HejnolDirector of the Institute of Zoology and Evolutionary Research, Friedrich Schiller University JenaVerified email at uni-jena.de
Javier del CampoGroup Leader, Institute of Evolutionary Biology (CSIC - Universitat Pompeu Fabra)Verified email at ibe.upf-csic.es
Laura EmeURI - CNRSVerified email at cnrs.fr
Xavier Grau-BovéCentre de Regulació GenòmicaVerified email at crg.cat
David A. GoldAssociate Professor, University of California, DavisVerified email at ucdavis.edu
Manuel IrimiaCentre for Genomic RegulationVerified email at crg.eu
José María Martín-DuránReader, Queen Mary University of London, School of Biological and Chemical SciencesVerified email at qmul.ac.uk

Alex de Mendoza

Senior Lecturer, Queen Mary University of London, School of Biological and Behavioural Sciences

Verified email at qmul.ac.uk - Homepage

Evolutionary Biology Gene regulation Eukaryotic macroevolution


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The Capsaspora genome reveals a complex unicellular prehistory of animals H Suga, Z Chen, A De Mendoza, A Sebé-Pedrós, MW Brown, E Kramer, ... Nature communications 4 (1), 2325, 2013	322	2013
Transcription factor evolution in eukaryotes and the assembly of the regulatory toolkit in multicellular lineages A de Mendoza, A Sebé-Pedrós, MS Šestak, M Matejčić, G Torruella, ... Proceedings of the National Academy of Sciences 110 (50), E4858-E4866, 2013	250	2013
Unexpected Repertoire of Metazoan Transcription Factors in the Unicellular Holozoan Capsaspora owczarzaki A Sebé-Pedrós, A de Mendoza, BF Lang, BM Degnan, I Ruiz-Trillo Molecular biology and evolution 28 (3), 1241-1254, 2011	233	2011
Phylogenomics reveals convergent evolution of lifestyles in close relatives of animals and fungi G Torruella, A De Mendoza, X Grau-Bové, M Antó, MA Chaplin, ... Current Biology 25 (18), 2404-2410, 2015	209	2015
The evolution of the GPCR signaling system in eukaryotes: modularity, conservation, and the transition to metazoan multicellularity A De Mendoza, A Sebe-Pedros, I Ruiz-Trillo Genome biology and evolution 6 (3), 606-619, 2014	199	2014
Sterol and genomic analyses validate the sponge biomarker hypothesis DA Gold, J Grabenstatter, A De Mendoza, A Riesgo, I Ruiz-Trillo, ... Proceedings of the National Academy of Sciences 113 (10), 2684-2689, 2016	136	2016
Large-scale manipulation of promoter DNA methylation reveals context-specific transcriptional responses and stability A de Mendoza, TV Nguyen, E Ford, D Poppe, S Buckberry, J Pflueger, ... Genome Biology 23 (1), 163, 2022	127*	2022
Genomic Survey of Premetazoans Shows Deep Conservation of Cytoplasmic Tyrosine Kinases and Multiple Radiations of Receptor Tyrosine Kinases H Suga, M Dacre, A de Mendoza, K Shalchian-Tabrizi, G Manning, ... Science Signalling 5 (222), ra35, 2012	127	2012
Transient and permanent reconfiguration of chromatin and transcription factor occupancy drive reprogramming AS Knaupp, S Buckberry, J Pflueger, SM Lim, E Ford, MR Larcombe, ... Cell stem cell 21 (6), 834-845. e6, 2017	126	2017
Evolution of DNA methylome diversity in eukaryotes A de Mendoza, R Lister, O Bogdanovic Journal of Molecular Biology 432 (6), 1687-1705, 2020	119	2020
Evolution of the MAGUK protein gene family in premetazoan lineages A De Mendoza, H Suga, I Ruiz-Trillo BMC evolutionary biology 10, 1-10, 2010	112	2010
Tracing animal genomic evolution with the chromosomal-level assembly of the freshwater sponge Ephydatia muelleri NJ Kenny, WR Francis, RE Rivera-Vicéns, K Juravel, A de Mendoza, ... Nature Communications 11 (1), 3676, 2020	111	2020
The emergence of the brain non-CpG methylation system in vertebrates A de Mendoza, D Poppe, S Buckberry, J Pflueger, CB Albertin, T Daish, ... Nature ecology & evolution 5 (3), 369-378, 2021	102	2021
Complex transcriptional regulation and independent evolution of fungal-like traits in a relative of animals A De Mendoza, H Suga, J Permanyer, M Irimia, I Ruiz-Trillo elife 4, e08904, 2015	88	2015
Enteric neurons increase maternal food intake during reproduction D Hadjieconomou, G King, P Gaspar, A Mineo, L Blackie, T Ameku, ... Nature 587 (7834), 455-459, 2020	86	2020
Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings I Almudi, J Vizueta, CDR Wyatt, A de Mendoza, F Marlétaz, PN Firbas, ... Nature Communications 11 (1), 1-11, 2020	83	2020
Novel roles of plant RETINOBLASTOMA-RELATED (RBR) protein in cell proliferation and asymmetric cell division B Desvoyes, A de Mendoza, I Ruiz-Trillo, C Gutierrez Journal of experimental botany 65 (10), 2657-2666, 2014	68	2014
Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons A de Mendoza, A Bonnet, DB Vargas-Landin, N Ji, H Li, F Yang, L Li, ... Nature communications 9 (1), 1341, 2018	66	2018
Convergent evolution of a vertebrate-like methylome in a marine sponge A de Mendoza, WL Hatleberg, K Pang, S Leininger, O Bogdanovic, ... Nature ecology & evolution 3 (10), 1464-1473, 2019	62	2019
Origin and evolution of eukaryotic transcription factors A de Mendoza, A Sebé-Pedrós Current Opinion in Genetics & Development 58, 25-32, 2019	61	2019

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