| Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution JJ Smith, S Kuraku, C Holt, T Sauka-Spengler, N Jiang, MS Campbell, ... Nature Genetics, 2013 | 718 | 2013 |
| Enhancer-associated H3K4 monomethylation by Trithorax-related, the Drosophila homolog of mammalian Mll3/Mll4 HM Herz, M Mohan, AS Garruss, K Liang, Y Takahashi, K Mickey, O Voets, ... Genes & development 26 (23), 2604-2620, 2012 | 419 | 2012 |
| SET for life: biochemical activities and biological functions of SET domain-containing proteins HM Herz, A Garruss, A Shilatifard Trends in biochemical sciences 38 (12), 621-639, 2013 | 350 | 2013 |
| Engineering an allosteric transcription factor to respond to new ligands ND Taylor, AS Garruss, R Moretti, S Chan, MA Arbing, D Cascio, ... Nature methods 13 (2), 177-183, 2016 | 336 | 2016 |
| The Mll2 branch of the COMPASS family regulates bivalent promoters in mouse embryonic stem cells D Hu, AS Garruss, X Gao, MA Morgan, M Cook, ER Smith, A Shilatifard Nature structural & molecular biology 20 (9), 1093-1097, 2013 | 213 | 2013 |
| The super elongation complex family of RNA polymerase II elongation factors: gene target specificity and transcriptional output Z Luo, C Lin, E Guest, AS Garrett, N Mohaghegh, S Swanson, S Marshall, ... Molecular and cellular biology 32 (13), 2608-2617, 2012 | 206 | 2012 |
| Dynamic transcriptional events in embryonic stem cells mediated by the super elongation complex (SEC) C Lin, AS Garrett, B De Kumar, ER Smith, M Gogol, C Seidel, R Krumlauf, ... Genes & development 25 (14), 1486-1498, 2011 | 202 | 2011 |
| A deep learning approach to programmable RNA switches NM Angenent-Mari, AS Garruss, LR Soenksen, G Church, JJ Collins Nature communications 11 (1), 5057, 2020 | 129 | 2020 |
| Poised RNA Polymerase II Changes over Developmental Time and Prepares Genes for Future Expression B Gaertner, J Johnston, K Chen, N Wallaschek, A Paulson, AS Garruss, ... Cell Reports, 2012 | 115 | 2012 |
| Cohesin proteins promote ribosomal RNA production and protein translation in yeast and human cells T Bose, KK Lee, S Lu, B Xu, B Harris, B Slaughter, J Unruh, A Garrett, ... PLoS Genetics 8 (6), e1002749, 2012 | 113 | 2012 |
| The RNA Pol II elongation factor Ell3 marks enhancers in ES cells and primes future gene activation C Lin, AS Garruss, Z Luo, F Guo, A Shilatifard Cell 152 (1), 144-156, 2013 | 108 | 2013 |
| Genomic and biochemical approaches in the discovery of mechanisms for selective neuronal vulnerability to oxidative stress X Wang, A Zaidi, R Pal, A Garrett, R Braceras, X Chen, M Michaelis, ... BMC neuroscience 10 (1), 12, 2009 | 105 | 2009 |
| The little elongation complex regulates small nuclear RNA transcription ER Smith, C Lin, AS Garrett, J Thornton, N Mohaghegh, D Hu, J Jackson, ... Molecular cell 44 (6), 954-965, 2011 | 103 | 2011 |
| Codependency of H2B monoubiquitination and nucleosome reassembly on Chd1 JS Lee, AS Garrett, K Yen, YH Takahashi, D Hu, J Jackson, C Seidel, ... Genes & development 26 (9), 914-919, 2012 | 89 | 2012 |
| Polycomb Repressive Complex 2-Dependent and -Independent Functions of Jarid2 in Transcriptional Regulation in Drosophila HM Herz, M Mohan, AS Garrett, C Miller, D Casto, Y Zhang, C Seidel, ... Molecular and cellular biology 32 (9), 1683-1693, 2012 | 87 | 2012 |
| The little elongation complex functions at initiation and elongation phases of snRNA gene transcription D Hu, ER Smith, AS Garruss, N Mohaghegh, JM Varberg, C Lin, ... Molecular cell 51 (4), 493-505, 2013 | 69 | 2013 |
| Divergence of transcriptional landscape occurs early in B cell activation T Fowler, AS Garruss, A Ghosh, S De, KG Becker, WH Wood, ... Epigenetics & chromatin 8, 1-14, 2015 | 41 | 2015 |
| Deep representation learning improves prediction of LacI-mediated transcriptional repression AS Garruss, KM Collins, GM Church Proceedings of the National Academy of Sciences 118 (27), e2022838118, 2021 | 11 | 2021 |
| Bioinformatics process management: information flow via a computational journal L Feagan, J Rohrer, A Garrett, H Amthauer, E Komp, D Johnson, A Hock, ... Source Code for Biology and Medicine 2, 1-15, 2007 | 9 | 2007 |
| An unbiased index to quantify participant’s phenotypic contribution to an open-access cohort Y Chan, M Tung, AS Garruss, SW Zaranek, YK Chan, JE Lunshof, ... Scientific Reports 7 (1), 46148, 2017 | 7 | 2017 |
Ali ShilatifardProfessor and Chairman of Biochemistry, Director of Simpson Querrey Institute for EpigeneticsVerified email at northwestern.edu